Gene detail

Gene detail information of Glyur000440s00021865

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40340.1	2.00E-28	Integrase-type DNA-binding superfamily protein
NR	AGI78251.1	0	dehydration responsive element binding protein 2 [Caragana korshinskii]
Swissprot	tr\|Q8LFR2\|DRE2C_ARATH	4.00E-61	Dehydration-responsive element-binding protein 2C
trEMBL	tr\|M9RR30\|M9RR30_9FABA	0	Dehydration responsive element binding protein 2 {ECO:0000313\|EMBL:AGI78251.1}

Sequence

Transcript Sequence

>Glyur000440s00021865.1
ATGGGTGCTGCTTATGATCAAGGTTGTAATAAGCTTTCTCTTGTGCCCTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGTAATAGGGCTAATTCCGTGGCTGAGACTCTTGCCAAGTGGAAGGAATACAATGAGCATCTTAATTCTGGGAAAGAGGGTGGTAAACCAACTCGCAAAGCCCCNGCTAAGGGTTCAAAGAAAGGGTGTATGAAAGGGAAAGGAGGACCCCAAAACACTCTGTGCAACTACAGAGGTGTTAGACAGAGAACATGGGGTAAATGGGTAGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGGCTTTGGTTGGGTACTTTTCCTACTGCCCAAGAAGCNGCTCTTGCTTATGATGAAGCTGCTAGGGCCATGTATGGTCCTTGTGCACGCGTCAACTTCCCTCACATCACAGATTATAGTTTTATCAAGGAATCGTTGAAGGGATCTTCCTCTGCTGCTACAGCAGCTGCAAGCTGTTCTTGTTCTTCTGCGGCAACTCCTGCAACCTCTGACACAACTACTCTATCCAGTCATTCGGAGGTTTGTGCAGTTGAGGATGTTAAGGAGAAACCCCTATCTGTCAATGTAAACAATATGGTTAATGCTTGCTGTGAACCTTCCTCTCCAACTAGCAAAATGAAGCAAGTGCTGAAGGAAGAGCCTGTGGATTTCGCAGACCCTGGTGGTGGGGAAATCCAAGATGTCAAATCAGAAGGAAGACATGATGTTGGGCAAGCTGGCGGCGAGGATGTATGTAACAATCAGATGGATTTCTCATGGATTAATGATGGCTTTGATTTCAGTTCTGATGATTACTTGAAGAGTTTTTCCATGGATGAGTTATTTCAGGTGGATGAGCTTCTGGGGCATATAGACAGTAATCCAATTGATGACTCTGGGTTGATGCAAGGTTTNGATTTTGGACAAATGGATTTTCCTGGGGACAGTGATCCTATTCCTCAGATTGAGACGCCATCAAGCTTTTTTTATGAATTGCAAAACCTAGATGCCAAGCTGTTGGGAAGTTTGCCCCATATGNACCAGACACCATCTGGAGTTGATGATGGATTAGATTTCTTAAAAACAGAAGGGCCAGGGGACTGTAATGGTGGAGGCGAAGAGCCACGGTTTCTTAATTTGGATTATGATCTGAACCATGATTCAAAGGGAATGCAAGCAAGGAAGGATGAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00440	84732	85946	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000440s00021865.1	PF00847.15	AP2	83	133	5.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.079
SRR1783600	control	2.005
SRR1783602	moderate drought stress	3.578
SRR1811619	moderate drought stress	3.708

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.186
DRR006520	Root Summer glycyrrhizin high producing strain	42.826
DRR006521	Root Winter glycyrrhizin high producing strain	52.629
DRR006522	Root Winter glycyrrhizin high producing strain	50.451
DRR006523	Root Summer glycyrrhizin low producing strain	33.354
DRR006524	Root Summer glycyrrhizin low producing strain	32.649
DRR006525	Leaf Summer glycyrrhizin high producing strain	94.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	93.182

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.502
SRR2868004	Drought Stress (root)	3.169
SRR2967015	Control (root)	10.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.885
SRR9715740	Leaf	26.897
SRR9715741	Leaf	28.738
SRR9715739	Root	2.208
SRR9715742	Root	5.143
SRR9715743	Root	5.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.438
SRR8749028	MeJA induced 9h	33.830
SRR8749029	MeJA induced 9h	19.449
SRR8749030	Uninduced	4.785
SRR8749031	Uninduced	13.086
SRR8749032	Uninduced	14.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.803
SRR8400027	Control - Root	4.498