Gene detail

Gene detail information of Glyur000439s00019018.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07320.1	6.00E-166	O-Glycosyl hydrolases family 17 protein
NR	XP_003626949.1	0	Beta-1 3-glucanase [Medicago truncatula]
Swissprot	tr\|Q06915\|EA6_ARATH	2.00E-165	Probable glucan endo-1,3-beta-glucosidase A6 (Precursor)
trEMBL	tr\|G7LF67\|G7LF67_MEDTR	0	O-glycosyl hydrolase family 17 protein {ECO:0000313\|EMBL:AET01425.1}

Sequence

Transcript Sequence

>Glyur000439s00019018.1
TTTTACTATTTTATCACAACAACATTTCTCAAAATAACTATTAAACTCATTACTAATTGACAATTGCGCCAAAATACTCTCCCGTTTTGGACTAAGCCATTGTTTTCATCCAGCTCCTCTATCGTTTCCCCTGTGTCCATCTTCTCAAATTTCAACCAAATCAGCTATTGACAATCTAATTTTACCTTGTACACACACACCTTCTCAAATTCTATCTTACGTATTCCAAAAAAGCTATTTAAGGGACAGTTGAAAGAACCAAAATTAGACATCTCTTGTTGAGGCAGCTTCCTAGTTTAAGAAACAGAGTAGCAACTAGCAAAGAAAGCAAATGGCTATTGCTGTGCTTTCTCTGTTTCTCCTCTCCTCCTTATTCTCTACATCCAGTGGAGAGCTATCAGGGAGACCAGGAGTGAACTATGGGCAGTTAGGGAACAACCTCCCACCGCCAACAACCGCGGTGTCTCTGATCAAATCCCAGTTGAGAGCGAAGCGCGTGAAGATCTACGACGCGAACCACGACATCCTCAAAGCACTCGAGAACACAGGGATCCAAGTCTCCATCATGCTCCCAAACGAACTCGTCACAAACATCTCCACCAACGACCAAACACTCGCAAACGATTGGGTCCAATCCAACGTCGTACCGTTCTACCCACGCGCCCTCATCCGCTACCTCCTCGTCGGCAACGAACTCATCTCCACCACATCGAACCAAACGTGGCCCCACATCGTTCCCGCGATGCACAGGATCAAACGCGCCCTAACGGCCTTCGGTTTGCACAAGGTCAAAGTCGGAACACCCTCCGCGATGGACGTTTTGCAATCGTCGTTTCCGCCATCCAACGGAACCTTCAGAAACGACATTGCGTTGAGCGTCATGAAGCCAATGTTGGAGTTCCTTAATGAGACCCGCTCTTTTTTCTTCCTTGACGTGTACCCGTTTTTCGCTTGGGCTTCGGATCCTACCAATATTGATCTAAATTATGCGCTTTTCGATTCGGATAATATCACGGTTACGGATCCTGGTACGGGTTTGGTTTACACCAATTTGTTTGATCAGATGGTGGATGCAGTTTATTTCGCTATGGAGCGGCTCGGGTATCCAGGTATTCGGATCTTCATTGCGGAAACGGGTTGGCCCAATGGTGGCGACTTGGACCAAGTTGGAGCCAACATTCACAACGCTGGCACCTATAATAGAAATTTTGTGAGGAAAGTTACGAGAAAATCTCTAGTTGGGACTCCGGCCCGACCAGGTTCGGTTCTTCCGTCTTTTATCTTTGCGTTGTTCAACGAGAACTTGAAGCCAGGTTTGGGTACAGAGCGTCATTTTGGGTTATTTTACCCNAATGGATCGGCTGTTTATGAGATTGACCTTTCCGGGAAGACATTGGAGTCAGAGTTTGCGCCATTACCTCCGGCGAAGGATTACAGGGGGAAGGTGTGGTGTGTGGTGGCCAAGGGGGCAAACAAGACGGCGGTTGCAGCGGCATTGTCGTACNCTTGCTCGCAGGGGAACCGAACTTGTGATCCAATTCGACCCGGGAAACCGTGTTTCGAACCCAACTTGGTGGTGGGGCATGCTAGCTATGCGTTTAGTTCTTACTGGGCCCAGTTTAGGCATGTGGGTGGAACCTGTTACTTCGATGGCCTTGCCACCCAAATCGCAAAGGATCCAAGTTATGGATCTTGCAAGTACCCAAGTGTGACGCTCTGATCATGAAGCCAAAGCCAATCATATAAAATCAGCCAATGGAGTTTCGTAACTCTACCATTTGATAATTCGTTGGCAANTCAATACATAAGGAATTTAGAATCCTTTTCGTAGTCATTAATTAATTGTTGCTTTTCTTTTCACGAGGCTAGACACTCTTACCCACCAAGGAGGAAGTCATATTACTACTATTCTTTTATGAAGAGAAGTTATATTAATGAATGATTCAATTAGTTAAATGGAATACCGATAGTAAGTTGACTCCATTCACGTGTAGAANGGGTCATGACAAGGAAATACGATCTTCTTTTGTCCCCAACATAATGTCTTGGCATACAAAACTGAAAATGCGACAAAAAGTATTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	133274	136082	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00019018.1	PF00332.13	Glyco_hydro_17	27	349	1.30E-103
Glyur000439s00019018.1	PF07983.8	X8	373	444	5.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.492
SRR1783600	control	22.461
SRR1783602	moderate drought stress	25.388
SRR1811619	moderate drought stress	24.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.020
DRR006520	Root Summer glycyrrhizin high producing strain	17.818
DRR006521	Root Winter glycyrrhizin high producing strain	16.767
DRR006522	Root Winter glycyrrhizin high producing strain	16.062
DRR006523	Root Summer glycyrrhizin low producing strain	16.684
DRR006524	Root Summer glycyrrhizin low producing strain	15.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.318
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.693

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.171
SRR2868004	Drought Stress (root)	24.940
SRR2967015	Control (root)	19.838

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.581
SRR9715740	Leaf	39.116
SRR9715741	Leaf	48.148
SRR9715739	Root	15.397
SRR9715742	Root	24.537
SRR9715743	Root	19.736

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.716
SRR8749028	MeJA induced 9h	6.688
SRR8749029	MeJA induced 9h	4.031
SRR8749030	Uninduced	9.076
SRR8749031	Uninduced	6.206
SRR8749032	Uninduced	5.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.460
SRR8400027	Control - Root	21.883