Gene detail information of Glyur000439s00019016


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63440.10heavy metal atpase 5
NRXP_003626948.10Heavy metal ATPase [Medicago truncatula]
COGYP_001179064.10heavy metal translocating P-type ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|Q9SH30|HMA5_ARATH0Probable copper-transporting ATPase HMA5
trEMBLtr|G7LF66|G7LF66_MEDTR0Heavy metal P-type ATPase {ECO:0000313|EMBL:AET01424.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00439125759132306+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K17686copA, ATP7EC:3.6.3.54MAPK signaling pathway - plantmap04016
Platinum drug resistancemap01524


Gene Ontology

biological_process

GO:0006812  cation transport

GO:0030001  metal ion transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0005507  copper ion binding

GO:0019829  cation-transporting ATPase activity

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000439s00019016.1PF00403.21HMA29882.20E-09
Glyur000439s00019016.1PF00403.21HMA1051648.30E-10
Glyur000439s00019016.1PF00122.15E1-E2_ATPase3816165.20E-48
Glyur000439s00019016.1PF00702.21Hydrolase6208452.20E-50


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.324
SRR1783600control2.389
SRR1783602moderate drought stress3.407
SRR1811619moderate drought stress3.265

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.371
DRR006520Root Summer glycyrrhizin high producing strain4.305
DRR006521Root Winter glycyrrhizin high producing strain6.182
DRR006522Root Winter glycyrrhizin high producing strain5.879
DRR006523Root Summer glycyrrhizin low producing strain6.619
DRR006524Root Summer glycyrrhizin low producing strain6.576
DRR006525Leaf Summer glycyrrhizin high producing strain16.928
DRR006526Leaf Summer glycyrrhizin high producing strain16.733

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)19.306
SRR2868004Drought Stress (root)22.292
SRR2967015Control (root)21.131

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf16.281
SRR9715740Leaf20.289
SRR9715741Leaf18.950
SRR9715739Root1.677
SRR9715742Root6.147
SRR9715743Root6.336

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.088
SRR8749028MeJA induced 9h11.307
SRR8749029MeJA induced 9h10.653
SRR8749030Uninduced23.474
SRR8749031Uninduced21.382
SRR8749032Uninduced27.607

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root8.924
SRR8400027Control - Root8.307

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved