Gene detail

Gene detail information of Glyur000439s00019014.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48570.1	0	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
NR	XP_004510236.1	0	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cicer arietinum]
COG	YP_007057296.1	6.00E-35	FKBP-type peptidyl-prolyl cis-trans isomerase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q38931\|FKB62_ARATH	0	Peptidyl-prolyl cis-trans isomerase FKBP62
trEMBL	tr\|V7ALP9\|V7ALP9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06155.1}

Sequence

Transcript Sequence

>Glyur000439s00019014.1
GGAAACTGTCCACTCTCCTCACTCACTCGTTCTGAGAACTTAGCGTAGAAGTCTCTGGAACCCTCCAACGAGTCTTTCACTCACTCATTTCCTTTTATACCCCTCTCTCTCCAGTTCCACCCCTCATTCATTCCCTACCTGCTTTTAGACTTGAAACCTTCGTTCATCTCTGCATTTTCTGTGCCTCTTTTCCCTACATTTCCATTTTCCCGCATTGTACCGAACGAAAAAAACATGGACGAGGATTTCNACATGCCGGCGGTGGAGGAGCCAATGAACGATGACTTCGACTTCGCCGGCGCCGCCGACGTCGACAACTCCATCCTCAAGGTCGGAGAGGAGAAGGAGATTGGGAAGCAGGGCTTGAAGAAGAAACTCCTCAAGGAAGGTGAAGGATGGGACACTCCCGAAGTTGGTGATGAAGTTCAAGTTCACTATACTGGGACGTTGCTTGATGGCACTAAGTTTGATTCCAGCAGAGATAGGGGAACCCATTTCGGCTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCACCTGAATTAGCTTATGGTGAATCCGGTTCTCCTCCAACTATTCCTCCCAATGCGACTCTCCAGTTTGATGTTGAGCTGCTGTCTTGGACTAGTGTGAAGGACATATGTAAGGATGGAGGCTTATTTAAGAAGATAATCAAGGAGGGGGAGAAGTGGGAAAACCCCAAGGAACCTGATGAAGTTTTAGTTAAGTATGAAGCACGTCTTGATGATGGAACACTTGTAGCAAAATCTGATGGAGTGGAGTTCACAGTCAAAGAGGGTCATTTTTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGCAAGCCAGCACATGGGGATGAAGGTGGAGTTCCACCCAATGCAACATTGCAGATTACTCTCGAGTTAGTTTCTTGGAAGACTGTTTCTGAAGTAACTGATGACAAGAAGGTCATCAAAAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCATTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGTACTTTATTTTTGAAAAAGGGCCATGATGGTGATGAAGCAGAGCTGTTTGAATTCAAGACAGATGAGGAGCAAGTGATTGATGGGCTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTAGCATTGTTGACTATTGCGCCTGAGTATGCTTTTGGATCATCAGAGTCGAAGCAGGAATTGGCAGTGGTTCCTCCTAACTCCACCGTGTATTATGAGGTTGAGTTAGTATCATTTGTGAAGGAGAAGGAGTCCTGGGACATGAACACTCAAGAGAAGATAGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCGTTGTTTAAAGCCGGAAAATATGCAAGAGCTTCTAAAAGATATGAGAAGGCTATAAAGTTCATAGAGTATGATTCTTCCTTTAGTGAAGAAGAGAAGAAGAATGCCAAGGCCTTGAAGGTTGCCTGCAATCTGAACGATGCAGCATGCAAGCTGAAGTTGAAAGATTACAAACAAGCAGAGAAATTGTGTACAAAAGTGCTGGACCTTGAAAGCACAAATGTAAAGGCCCTCTATCGAAGGGCCCAGGCACATATCCAGTTGGCTGACTTGGATTTGGCTGAATTTGATATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTCAAGCTGGAGTACAAGACTTTGAAGGAAAAGGTGAAGGAGTACAATAAGAAGGACGCAAAATTTTATGGAAATATGTTCGGCAAAATGAAAAAATTGGATTCTCTTGACAGTAATAAGTCGGCAACCAAGGATGCTGAACCCATGAGCATTGACAGCAAGGCATAAACACTATGGAAATTCATCAAATCCTGANACTGTTTTCTTGTTATTGTTTCTCGACATTTGGAAATTATTATGGTGGATTTTATGGGGACAAGTTTTGTTCTGTTGTTAAGAATAGGGAAAGCTGTGTGAACGAAATCGATTATCAATTTGGCATGACATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	108437	112560	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09571	FKBP4_5	EC:5.2.1.8	Estrogen signaling pathway	map04915

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00019014.1	PF00254.23	FKBP_C	56	146	1.70E-34
Glyur000439s00019014.1	PF00254.23	FKBP_C	172	263	2.10E-17
Glyur000439s00019014.1	PF00254.23	FKBP_C	288	385	1.70E-20
Glyur000439s00019014.1	PF07719.12	TPR_2	411	433	0.02
Glyur000439s00019014.1	PF13414.1	TPR_11	460	519	5.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.842
SRR1783600	control	37.037
SRR1783602	moderate drought stress	24.888
SRR1811619	moderate drought stress	24.615

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	104.685
DRR006520	Root Summer glycyrrhizin high producing strain	104.329
DRR006521	Root Winter glycyrrhizin high producing strain	16.732
DRR006522	Root Winter glycyrrhizin high producing strain	16.287
DRR006523	Root Summer glycyrrhizin low producing strain	102.724
DRR006524	Root Summer glycyrrhizin low producing strain	101.326
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.721
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.786

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.766
SRR2868004	Drought Stress (root)	32.172
SRR2967015	Control (root)	30.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.364
SRR9715740	Leaf	43.801
SRR9715741	Leaf	39.512
SRR9715739	Root	2.148
SRR9715742	Root	24.591
SRR9715743	Root	21.823

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	44.306
SRR8749028	MeJA induced 9h	21.388
SRR8749029	MeJA induced 9h	10.892
SRR8749030	Uninduced	2.264
SRR8749031	Uninduced	0.226
SRR8749032	Uninduced	2.903

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.577
SRR8400027	Control - Root	60.175