Gene detail

Gene detail information of Glyur000439s00019013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59240.1	3.00E-86	Ribosomal protein S8e family protein
NR	XP_002446216.1	2.58E-138	hypothetical protein SORBIDRAFT_06g004770 [Sorghum bicolor]
COG	YP_004485025.1	1.00E-13	30S ribosomal protein S8 [Methanotorris igneus Kol 5]
Swissprot	tr\|Q08069\|RS8_MAIZE	3.00E-138	40S ribosomal protein S8
trEMBL	tr\|C5YDP0\|C5YDP0_SORBI	1.00E-138	40S ribosomal protein S8 {ECO:0000256\|RuleBase:RU000669}

Sequence

Transcript Sequence

>Glyur000439s00019013.1
ATGTTTGGTCCAGAACCAGATAATATTCTTCACAGGTGCACAGATGGTGAGACCGCAAGTGGAGTGGATCACTCAACAGGCTCCTGCGGCCTGCGGGGAGCACTGTGGATGCAANCCATGCGGATGTCCCAAGACTGTTGCAGCTGGAACTTGTTGCAAATGCGCCTCAGAGGCGCTCTCCATAGATCAAATAAGTACTCGACCACAAATGGTATTTCCAGGGATTCTATGCACAAAAGGAGAGCCACTGGTGGCAAAAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCAGCTAACACCAAGCTGTCAAGCAACAAGACAATAAGGAGGATTCGTGTAAGAGGTGGCAATGTGAAATGGAGGGCACTGAGATTGGATACTGGAAATTATTCATGGGGAAGTGAAGCTGTAACTCGCAAAACTCGTGTACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACNCAGACCCTTGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGAGATCGGTAGGAAAAAGAAAACAGCTGCCAAGAAGGACGTGGCACCAGAGGAGGGTGATGCTGCTACAGAAGAAACCAAAAAGAGTAACCATGTGCAGAGAAAAATTGAGAAACGCCAGAAAGAGCGTACGCTAGATGCCCACATTGAAGAGCAGTTTGGTGGTGGGCGATTGTTGGCCTGCATTTCTTCTCGACCTGGTCAATGTGGCAGGGCTGATGGCTACATTCTGGAAGGTAAGGAACTGGAATTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGGTGCTGCTTGATTGTAGTGTTTCCAAAAATTTTATATGGCTGTAGTTGTTTTTATTGGGAGCAGTACCGTTCAAGATGTTTTGTGCTTCAGTTGATACTGTTGGCCAACCACCTTTAGGACAAATGCCATAGGACATCATCTAGTTCGAACGTTCTTTTTCAGTCCGTTGTCAATTGTCTCTTGATTTTGTTTTCAACTGTTTTTGTTAATGATGATTTACAATTTTGATCAATGAATGTTTCTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	102262	106980	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00019013.1	PF01201.17	Ribosomal_S8e	71	266	7.10E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.948
SRR1783600	control	65.803
SRR1783602	moderate drought stress	45.029
SRR1811619	moderate drought stress	44.921

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	173.065
DRR006520	Root Summer glycyrrhizin high producing strain	170.718
DRR006521	Root Winter glycyrrhizin high producing strain	96.963
DRR006522	Root Winter glycyrrhizin high producing strain	95.049
DRR006523	Root Summer glycyrrhizin low producing strain	131.467
DRR006524	Root Summer glycyrrhizin low producing strain	134.489
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.282
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	358.030
SRR2868004	Drought Stress (root)	204.326
SRR2967015	Control (root)	175.919

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	105.616
SRR9715740	Leaf	98.307
SRR9715741	Leaf	82.334
SRR9715739	Root	36.471
SRR9715742	Root	85.782
SRR9715743	Root	79.943

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	280.474
SRR8749028	MeJA induced 9h	141.699
SRR8749029	MeJA induced 9h	183.385
SRR8749030	Uninduced	41.777
SRR8749031	Uninduced	17.551
SRR8749032	Uninduced	22.716

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	170.119
SRR8400027	Control - Root	156.105