Gene detail

Gene detail information of Glyur000439s00019001

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02090.1	0	Insulinase (Peptidase family M16) protein
NR	NP_001284394.1	0	probable mitochondrial-processing peptidase subunit beta [Cucumis melo]
COG	YP_002299804.1	7.00E-97	Peptidase, M16 family [Rhodospirillum centenum SW]
Swissprot	tr\|Q42290\|MPPB_ARATH	0	Probable mitochondrial-processing peptidase subunit beta (Precursor)
trEMBL	tr\|Q9AXQ2\|Q9AXQ2_CUCME	0	Mitochondrial processing peptidase beta subunit {ECO:0000313\|EMBL:AAK07827.1}

Sequence

Transcript Sequence

>Glyur000439s00019001.1
AAAATTGGAAAACGCTTAAACGGTGCGTTGCACGGCTTTTNCCTTCATTCCCCATAATAATAAAAACACACTAGAGAGTCTAGACGATGATGCCATGTCATTGGTCAAAGAAATTCCGAACGACAAGCAGATGAAACAGTGAAAAGCTTCCCCACACTCTCTTCCCTCCCGTAACAACACATCACACAAACTCACACCCCCCCACACCATGGCCTTCAAGCNCCTCCTAACCGCCGCGGCGCGCCATTCCCGCCGCCGCATTCCCCCGGCCCGGCCCGCCTCCACCGCGCCGGGGTCATTCTCCTCCCCGCCATCCCCACCGGCCCCCAACGTCATGCTCTACGACCGCCTCGCCTCTGCCGTCAACCACAAGCTTCGCGGCCTAGAGAATCTGGACCCGCGCTTCCTCAAGTACGGTTCCCCTATCCCTACCCTCTCGGACCACACGCGCTTCCTGGAGGCACCCGAGACGCGCGTGACTACACTCCCCAGCGGCCTCCGCGTCGCCACGGAGACCTCCCTCGCCGCCAGGACGGCCACCGTGGGAGTGTGGATCGACGCCGGGTCGAGGTTCGAGACGGAGGAGACGAACGGAACCGCGCACTTTGTGGAGCACATGATATTCAAGGGAACCGAGAAGCGTTCCGCGAGGGAGCTTGAGGAGGAGATCGAGAACATGGGTGGACACCTCAATGCCTACACCTCTAGGGAACAGACTACCTATTACGCTAAGGTTATCAACGATGATGTCCCCAAGGCACTTGATATTTTGGCTGATATTTTGCAGAATTCTAAGTTTGATCGCAATAGGATCAGCCGCGAACGTGATGTTATTCTTAGGGANATGGATGAGGTTGAGGGGCAAACAGAGGAAGTAATTTTTGATCATTTACATGCAACCACTTTCCAGTACACTCCACTTGGTAGAACAATTCTTGGACCTGCTCAGAATATTAAGACAATCACCAAAGATCATCTGCAGAACTACATTCAGACACACTACACAGCTCCTAGGATGGTGGTAGCTGCATCTGGAGCTGTCAAGCATGAAGATATTGTTCAGCATGTAAAATCGTTGTTTACCAAGTTGTCAACAGATCCCACCACAGCTTCTCAATTAGTTAGAATATTGGATGATGATATTCCCCTTGCTCAATTTGCGGTAGCTTTTGAAGGCGCAGCTTGGTCGGATCCCGATTCTGTTGCCCTCATGGTCATGCAAGCTATGTTGGGTTCTTGGAATAAAATAGGAGGTGGAAAACACATGGGTTCTGCATTAGCCCAACGAATTGCCATTAGTGAAGTTGCTGAAAGCATGATGGCTTTCAATACCAATTACAAGGATACAGGTCTTTTTGGCATTTATGCTGTTGCTAAGAAGGATTGTTTGGATGATTTGTGCTACGCAATAATGTATGAGACAACCAAGTTGGCTTGTAAGGTTTCAGAAGATGATGTTACACGTGCTCGTAATCAGTTGAAATCTTCGCTCCTGCTCCACATAGACGGAACAAGTCCAGTAGCTGAAGATATTGGGCGCCAGCTACTCACCTACGGCAGAAGAATACCATTTGGAGAATTGTTTGCTAGGATTGACGGTGTTGATGCAAGCACCATTAAACGTGTTGCAAACCGATTTATTTATGACAAGGATATTGCAATTGCTGCAATGGGACCCATTCAGCGTTTGCCTGATTACAATTGGTTCAGACGCAGAACCTACTGGAACCGCTATTAGTTTATTTTTGTTTATTTTTCTGCTTCATTTCATTTTTTTTTCCAACTCATTGGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	30113	35124	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0003824 catalytic activity

GO:0004222 metalloendopeptidase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00019001.1	PF00675.15	Peptidase_M16	98	245	1.20E-54
Glyur000439s00019001.1	PF05193.16	Peptidase_M16_C	252	424	5.00E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.231
SRR1783600	control	2.327
SRR1783602	moderate drought stress	1.317
SRR1811619	moderate drought stress	1.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.824
DRR006520	Root Summer glycyrrhizin high producing strain	4.708
DRR006521	Root Winter glycyrrhizin high producing strain	0.916
DRR006522	Root Winter glycyrrhizin high producing strain	0.839
DRR006523	Root Summer glycyrrhizin low producing strain	0.921
DRR006524	Root Summer glycyrrhizin low producing strain	0.829
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.036

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.403
SRR2868004	Drought Stress (root)	2.178
SRR2967015	Control (root)	2.255

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.756
SRR9715740	Leaf	0.585
SRR9715741	Leaf	0.306
SRR9715739	Root	1.286
SRR9715742	Root	0.938
SRR9715743	Root	0.666

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.415
SRR8749028	MeJA induced 9h	2.850
SRR8749029	MeJA induced 9h	3.509
SRR8749030	Uninduced	1.076
SRR8749031	Uninduced	0.292
SRR8749032	Uninduced	0.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.820
SRR8400027	Control - Root	2.592