Gene detail

Gene detail information of Glyur000439s00018996

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48770.1	4.00E-55	Disease resistance protein (TIR-NBS-LRR class) family
NR	KEH37324.1	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
COG	YP_001914303.1	4.00E-07	leucin rich protein [Xanthomonas oryzae pv. oryzae PXO99A]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-49	TMV resistance protein N
trEMBL	tr\|A0A072V5P5\|A0A072V5P5_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:KEH37324.1}

Sequence

Transcript Sequence

>Glyur000439s00018996.1
ATGTCTTCTTCTTCATCCACCAATCCTCAATGGATATNTGACGTGTTCATCAATTTTAGAGGGGAAGACACTCGCAGCAGCTTCGTTTCTCATCTCCATGCCGCCCTCTCAAATGCCGGAATCAACACTTTCGTCGACCACCAAGTTCCCAAGGGAACTGATTTGGAACCAGAACTGTTGCGAGCAATACAAGGTTCTCATATAGCTATCGTTGTTTTCTCCGAAACCTATGTCGAATCTAGTTGGTGTCTCAACGAGCTGGAACATATCATGGAATGCCACAGTACTTATGGCCAAGTAGTTGTGCCCATATTTTACAACGTNGACCCTTCCGTTGTGCGTCATCAAGCAGGTGCTTTTGGAAAAGCCTTGAAAGCAACAGCGAAAAAAAGATACTCAAGAGGGGAAGGGATGGAGTATGTGNTGTCCTGTTGGAGGAGTACACTAACCCTAGCTACAAACTTCTCTGGTTGGGATGTGACGAATTGCAGGGAAGTTTGTATGATAGGGATATGGGGAATGGGCGGATCCGGTAAAACCACCTTAGCCAAAGCCATCTACAACCGAATTCATCACAGATTTGTGGATAGAAGTTTCATCGAAAATATTAGAGAAGTTTGTGAGAAAGAAAATGGAGGAATTGTTCCTTTACAAGAACAACTTCTTTCAGATATCCTAAAAATAAAGGAGAAGAAGATACATAGCATCACATTGGGGACAGCTATGATTGAGAAAAGACTTCATGGGAAAAGGGTTTTNGCTGTGCTTGATGATGTGACCACGTTTGAACAATTAAAAGCGTTATGTGGAAATCCTAAATTGTTTGGTTTTGGAAGTGTATTAATTGTTACAACTAGAGATGTNCGCCTTCTCAATTTACTTAATGTTGACTATGTTTCTACAATGAAGGAAATGGATGAAAAAACTGTAGAGGGATTGGTTTTGAAGTTGCAAAGAACCAGCACAGTTTCCTTTAGTACTGATTGTTTCAAGGAGATGAAGAAATTGAGACTTTTACAACTTGATCGTGTTGACCTCACTGGAGATTATGGGTATCTTTCTAAAGAACTGAGATGGATGCATTGGAATGGATTTACCTTCAACTATATACCCGATAACTTTTATCAGGGAAATCTAGTTGTTATTGACTTAAAACACAACAATTTTAAACAAGTGTGGAATGAAACCAAGTTGCTGGAAAAACTAAAAATTCTCAATCTCAGTCATTCCCGATACTTGAAAAGCACCCCTGACTTTTCACAACTACCGAATCTTGAAAAGCTCATTATGAAGGATTGTCCAAGTTTGTCTGAGATACACCAGTCCATTGGAGATCTCAACAATCTTCTTCTAATAAATTTGAAGGACTGTACAAGCCTTAGCAATCTCCCAAGGAAGATCTATGAGTTGAAATCTTTGAAAATTCTCATTCTTTCTGGTTGTTCAAAGATTGACCAAATAGAAGGGATAGTGCAGATGGATTCCTTGACAACTCTAATTGCAGAAAATACTGCTGTGAAACAAGTGCCCTTTTCAATAGTAAGATCAAAAAGCATTGGATATATATCCCTATGTGGATATGAAGGATTATCACATGATGTTTTTCCTTCTCTCATTCGGTCTTGGATGTCACCAACAATGAATTTCCTACCTCGTACTTCCCCATTCGGGAGCATGTCATTGTCTTTAGTTTCCATCAATGTTCAGAATAATAACTTGGGCCATCTATTACCAATGGTTAGCTGCCTTTCGAAACTTAGAAGTGTTTGGGTACAATGCCACTCAGAGATTCAATTAACTGAAGAATTGCAAAGAATTCTTGCTGAACAATATGATGTAAATTTTACCAAATTGGAAACATCACATGCATCACAAACATCAGATATTTCCTTGAAATCGCTTTTGATTGGAATGGGAAGGTACCACATGGTCATTGATAACATATCGCAGAATGATACTGGATTGACATCCAATGGTTCTAGTAATTTTGTCCTTCCTGGTGACAATTATCCTTCTTGGTTAGCCTCTAAAGGTGAAGGGCCTTCAGTCTATTTTCAAGTTCCTGAGGACAGTGATTGTTGCATCAAGGGAATGGTTTTATGTGTTGTTCATTCATCAACACCTGAAGATGTGGCAACTGAATGCCTTACTAGTGTCTTGATCGTTAACCACACAAAGTTCACCATCCAGATATACAAGCGAGACACGGTAATGTCCTTTAATGATGAAGATTGGCAGGGTGTAATATCAAACCAAGGAGCTGGTGACAGTATGGAGATTTATGTATCTTTTGGGCATGGACTGAATGTTAAGGAAACAGCTGTCTATCTAGTATATGGCCAATCAGTTACTATGGACATTGAGCCATCAATTAATATGGAAGTTGAGCCATGGACTACCATGAAAATGGAGTTGTTGGAGAAGCTAAAAATTCTCAATCTTAGTCATTCAAGATACTTAAAAAGTACCCCTGACTTTTCAAAACTGCCAAATCTAGAAAAGCTCCTTATGAAGGACTGTCCAAGTTTGTCCGAGGTACACCAGNCCATCGGAGATCTTAAGAATCTTGTTCTGATAAATTTGAAGGACTGTACAAGTCTCAACAATCTCCCAAGGAAGATCTATCAGTTGAAATCTTTGAAGACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGACGAAGACATAGTGCAGATGGAATCATTGACGACACTGATTGCAAAGGATACAGCTATAAATGAAGTGCCCTATTCAATAGTAACATCTAAAAGCATTGCATATATCTCCCTATGTGGTTATGAAGGATTATCACATGATGTTTTTCCTTCTCTAATTTGGTCTTGGATGTCACCAACAATGAATTCCTTACCACACATTCCCCCTTTTGGGGGCATGTCACTGTCTCTAGTTTCCTTGGATGTAGAGAGTCATAATTTGGGTTTGGGCTATCTATCACCCATGCTTAACAGCCTTTCAAAACTTAGAAGTGTTCAGCTTCAATGCCACTCCGAAATTCAACTAACTCAAGAATTAAGAAGATTTCTTGATGGTCTATGTGATGCAAATTTTAATGAATTGGAAACATCACATGCATCACAAATCTCGGATCTTTCCTTGAGATCACTTTTGATTGGAATAGGAAATTGCCACACAGTCTTGGATACTCTTGGCAAGAGCATATCACAGATACAAATTTATTAA

Protein Sequence

>Glyur000439s00018996.1
MSSSSSTNPQWIXDVFINFRGEDTRSSFVSHLHAALSNAGINTFVDHQVPKGTDLEPELLRAIQGSHIAIVVFSETYVESSWCLNELEHIMECHSTYGQVVVPIFYNVDPSVVRHQAGAFGKALKATAKKRYSRGEGMEYVXSCWRSTLTLATNFSGWDVTNCREVCMIGIWGMGGSGKTTLAKAIYNRIHHRFVDRSFIENIREVCEKENGGIVPLQEQLLSDILKIKEKKIHSITLGTAMIEKRLHGKRVXAVLDDVTTFEQLKALCGNPKLFGFGSVLIVTTRDVRLLNLLNVDYVSTMKEMDEKTVEGLVLKLQRTSTVSFSTDCFKEMKKLRLLQLDRVDLTGDYGYLSKELRWMHWNGFTFNYIPDNFYQGNLVVIDLKHNNFKQVWNETKLLEKLKILNLSHSRYLKSTPDFSQLPNLEKLIMKDCPSLSEIHQSIGDLNNLLLINLKDCTSLSNLPRKIYELKSLKILILSGCSKIDQIEGIVQMDSLTTLIAENTAVKQVPFSIVRSKSIGYISLCGYEGLSHDVFPSLIRSWMSPTMNFLPRTSPFGSMSLSLVSINVQNNNLGHLLPMVSCLSKLRSVWVQCHSEIQLTEELQRILAEQYDVNFTKLETSHASQTSDISLKSLLIGMGRYHMVIDNISQNDTGLTSNGSSNFVLPGDNYPSWLASKGEGPSVYFQVPEDSDCCIKGMVLCVVHSSTPEDVATECLTSVLIVNHTKFTIQIYKRDTVMSFNDEDWQGVISNQGAGDSMEIYVSFGHGLNVKETAVYLVYGQSVTMDIEPSINMEVEPWTTMKMELLEKLKILNLSHSRYLKSTPDFSKLPNLEKLLMKDCPSLSEVHQXIGDLKNLVLINLKDCTSLNNLPRKIYQLKSLKTLILSGCSKIDKLDEDIVQMESLTTLIAKDTAINEVPYSIVTSKSIAYISLCGYEGLSHDVFPSLIWSWMSPTMNSLPHIPPFGGMSLSLVSLDVESHNLGLGYLSPMLNSLSKLRSVQLQCHSEIQLTQELRRFLDGLCDANFNELETSHASQISDLSLRSLLIGIGNCHTVLDTLGKSISQIQIY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00439	2800	11954	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000439s00018996.1	PF01582.15	TIR	15	131	1.70E-33
Glyur000439s00018996.1	PF00931.17	NB-ARC	162	303	1.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.167
SRR1783600	control	2.266
SRR1783602	moderate drought stress	2.262
SRR1811619	moderate drought stress	2.449

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.070
DRR006520	Root Summer glycyrrhizin high producing strain	3.867
DRR006521	Root Winter glycyrrhizin high producing strain	1.329
DRR006522	Root Winter glycyrrhizin high producing strain	1.254
DRR006523	Root Summer glycyrrhizin low producing strain	6.230
DRR006524	Root Summer glycyrrhizin low producing strain	6.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.337
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.337

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.435
SRR2868004	Drought Stress (root)	15.125
SRR2967015	Control (root)	14.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.429
SRR9715740	Leaf	4.627
SRR9715741	Leaf	8.871
SRR9715739	Root	0.162
SRR9715742	Root	2.216
SRR9715743	Root	2.242

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.404
SRR8749028	MeJA induced 9h	6.160
SRR8749029	MeJA induced 9h	2.241
SRR8749030	Uninduced	4.600
SRR8749031	Uninduced	2.696
SRR8749032	Uninduced	2.567

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.588
SRR8400027	Control - Root	4.992