Gene detail

Gene detail information of Glyur000438s00022655

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51410.1	4.00E-152	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004491683.1	0	PREDICTED: cinnamoyl-CoA reductase 1-like [Cicer arietinum]
COG	YP_002015379.1	6.00E-67	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q500U8\|TKPR1_ARATH	3.00E-89	Tetraketide alpha-pyrone reductase 1
trEMBL	tr\|I3T3D7\|I3T3D7_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47029.1}

Sequence

Transcript Sequence

>Glyur000438s00022655.1
AGGAGTGNTCTCTAGAGCGTGACGTGAGTACTGAGTTACGTGTTGGTAATTAATTCCTGTTGGACTATTTAAGCATAAGTAAGTGTGTTGGANTTGGAATTGGANTAGTATTGTAAGCGGAGAGCCGCAGAGGAAGGAAGGAAGGAAGAGAGAAAGAGGTGCAGAAATCAAATCAGAATGAGCAGCAGCGCAGGGAAGGTGGTGTGTGTGACTGGTGCCTCCGGTTATATCGCTTCATNGATCGTCAAATTTCTTCTCCATCGGGGTTACACCGTCAAGGCCACCGTTCGCGACCCAAGTGATCCCAAAANGATCAACCACTTGCTTAACCTTGATGGTGCTAAGGAGAGGTTGCACCTGTTTAAAGCAAATCTCCTGGAAGAAGGTTCCTTTGACTCTGTTGTTCAAGGCTGTCATGGTGTCTTTCATACTGCATCTCCCTTCTATCATGATGTCAAAGATCCGCAGGCTGAATTATTAGATCCTGCCGTGAAGGGAACTCTCAATGTTCTTAAATCATGTGTAAAATCGACATNGCTGAAACGTGTTGTCTTAACCTCCTCCATTGCTGCAGTTGCATATAATGGAAAGCCTCGAACTCCCGACGTAGTAGTTGACGAGTCTTGGTTTTCCAACCCAGATTTCTGTAGGGAATCAAAGATGTGGTATGTGCTTTCAAAGACATTGGCTGAAGATGCTGCCCGGAAATTTGTAAGTGAAAACAACATTGACATGGTTACTATTAACCCAGCAATGGTGATAGGGCCTCTCTTGCAACCAGTCCTTAACACAAGTGCTGCTTCAGTTTTGAACCTGGTTAATGGTGCACAAACATTTCCGAATGCTACTTTTGGATGGATCAATGTGAAAGACGTTGCAAATGCCCATATTCAGGCATATGAGAATGCTTCAGCTAGTGGAAGATATTGTTTGGTTGAGAGAGTGGTGCACTACTCTGAAATTGTGAAGATTTTACGTGAACTTTACCCTTCGTTACAACTTCCAGAGAAGTGTGCGGATGATAAGCCGTATGTGCCCACATATCAGGTTTCCAAAGAAAAGGCAAAGAGCTTGGGAATTGAATTCACTCCTTTGGAAGTGAGCCTGAAGGAGACCGTGGAAAGTTTGAAAGAAAAGAAGTTTTCCAACTTATAATTTGTGATATCTCCTGGAGGAGTAGATGTTTATATAATCTCAATATTTGGCGACTTGGTTTCTGATGCCGATGCTTGTGAAGAAATTTACTATAAGTTAAATCAAAACTGGTGCTAATTACTGAAATAAGTCATGCATTGCTGATGGTATCCTCGTTGTATTAAACTACCATGCTTGAAAATGTCTGATGCAGCTCACTCATCTTCGAATCCCCCCGTGCCAAGACTTGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00438	139015	150215	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000438s00022655.1	PF01370.16	Epimerase	9	249	2.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	192.933
SRR1783600	control	193.982
SRR1783602	moderate drought stress	173.273
SRR1811619	moderate drought stress	172.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	125.032
DRR006520	Root Summer glycyrrhizin high producing strain	124.247
DRR006521	Root Winter glycyrrhizin high producing strain	72.656
DRR006522	Root Winter glycyrrhizin high producing strain	70.509
DRR006523	Root Summer glycyrrhizin low producing strain	78.404
DRR006524	Root Summer glycyrrhizin low producing strain	78.888
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	279.224
SRR2868004	Drought Stress (root)	324.324
SRR2967015	Control (root)	278.797

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	125.605
SRR9715740	Leaf	121.158
SRR9715741	Leaf	162.085
SRR9715739	Root	101.416
SRR9715742	Root	173.528
SRR9715743	Root	168.738

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	208.624
SRR8749028	MeJA induced 9h	547.611
SRR8749029	MeJA induced 9h	258.221
SRR8749030	Uninduced	1083.070
SRR8749031	Uninduced	1593.263
SRR8749032	Uninduced	543.928

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	324.812
SRR8400027	Control - Root	238.295