Gene detail information of Glyur000438s00022652 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72170.1 | 6.00E-25 | Domain of unknown function (DUF543) |
| NR | XP_004499334.1 | 9.23E-55 | PREDICTED: mitochondrial inner membrane organizing system protein 1-like isoform X3 [Cicer arietinum] |
| trEMBL | tr|I3T2E9|I3T2E9_LOTJA | 3.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:AFK46691.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00438 | 112092 | 114781 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000438s00022652.1 | PF04418.7 | DUF543 | 11 | 74 | 1.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.998 |
| SRR1783600 | control | 21.166 |
| SRR1783602 | moderate drought stress | 17.758 |
| SRR1811619 | moderate drought stress | 17.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.810 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.512 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.274 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.076 |
| SRR2868004 | Drought Stress (root) | 53.829 |
| SRR2967015 | Control (root) | 50.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.626 |
| SRR9715740 | Leaf | 34.130 |
| SRR9715741 | Leaf | 36.179 |
| SRR9715739 | Root | 28.376 |
| SRR9715742 | Root | 31.337 |
| SRR9715743 | Root | 26.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.350 |
| SRR8749028 | MeJA induced 9h | 26.790 |
| SRR8749029 | MeJA induced 9h | 38.488 |
| SRR8749030 | Uninduced | 5.830 |
| SRR8749031 | Uninduced | 1.474 |
| SRR8749032 | Uninduced | 7.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 75.706 |
| SRR8400027 | Control - Root | 72.807 |