Gene detail information of Glyur000438s00022642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09900.1 | 3.00E-137 | methyl esterase 12 |
| NR | XP_004499556.1 | 0 | PREDICTED: putative methylesterase 12, chloroplastic-like [Cicer arietinum] |
| COG | YP_001531045.1 | 4.00E-37 | alpha/beta hydrolase fold protein [Desulfococcus oleovorans Hxd3] |
| Swissprot | tr|Q940H7|MES12_ARATH | 0 | Putative methylesterase 12, chloroplastic (Precursor) |
| trEMBL | tr|G7IYE3|G7IYE3_MEDTR | 0 | Methylesterase {ECO:0000313|EMBL:AES68275.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00438 | 29517 | 35160 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000438s00022642.1 | PF12697.2 | Abhydrolase_6 | 98 | 337 | 2.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.123 |
| SRR1783600 | control | 16.260 |
| SRR1783602 | moderate drought stress | 15.209 |
| SRR1811619 | moderate drought stress | 14.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.384 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.224 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.429 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.593 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.432 |
| SRR2868004 | Drought Stress (root) | 24.355 |
| SRR2967015 | Control (root) | 19.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.452 |
| SRR9715740 | Leaf | 19.360 |
| SRR9715741 | Leaf | 22.356 |
| SRR9715739 | Root | 5.670 |
| SRR9715742 | Root | 14.151 |
| SRR9715743 | Root | 13.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 149.492 |
| SRR8749028 | MeJA induced 9h | 101.013 |
| SRR8749029 | MeJA induced 9h | 82.250 |
| SRR8749030 | Uninduced | 28.692 |
| SRR8749031 | Uninduced | 25.332 |
| SRR8749032 | Uninduced | 17.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.387 |
| SRR8400027 | Control - Root | 26.012 |