Gene detail information of Glyur000437s00025662 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15680.1 | 2.00E-25 | Ran BP2/NZF zinc finger-like superfamily protein |
| NR | KEH28709.1 | 2.75E-49 | zinc finger (Ran-binding) family protein [Medicago truncatula] |
| trEMBL | tr|A0A072UG31|A0A072UG31_MEDTR | 1.00E-49 | Zinc finger (Ran-binding) family protein {ECO:0000313|EMBL:KEH28709.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 99594 | 100926 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000437s00025662.1 | PF00641.13 | zf-RanBP | 3 | 28 | 0.0018 |
| Glyur000437s00025662.1 | PF00641.13 | zf-RanBP | 63 | 88 | 4.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.495 |
| SRR1783600 | control | 11.175 |
| SRR1783602 | moderate drought stress | 10.032 |
| SRR1811619 | moderate drought stress | 10.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.074 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.845 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.939 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.919 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.186 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.627 |
| SRR2868004 | Drought Stress (root) | 34.500 |
| SRR2967015 | Control (root) | 34.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.493 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 1.432 |
| SRR9715739 | Root | 2.949 |
| SRR9715742 | Root | 6.779 |
| SRR9715743 | Root | 5.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.695 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.930 |
| SRR8400027 | Control - Root | 34.705 |