Gene detail information of Glyur000437s00025655 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15420.1 | 2.00E-35 | |
| NR | XP_004506893.1 | 0 | PREDICTED: WD repeat-containing protein 43-like isoform X1 [Cicer arietinum] |
| COG | YP_001660506.1 | 5.00E-09 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| trEMBL | tr|A0A072UH09|A0A072UH09_MEDTR | 0 | Transducin family protein/WD-40 repeat protein, putative {ECO:0000313|EMBL:KEH28716.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 68176 | 74754 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000437s00025655.1 | PF04003.7 | Utp12 | 445 | 534 | 1.80E-13 |
| Glyur000437s00025655.2 | PF04003.7 | Utp12 | 445 | 534 | 1.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.904 |
| SRR1783600 | control | 9.127 |
| SRR1783602 | moderate drought stress | 14.233 |
| SRR1811619 | moderate drought stress | 14.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.324 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.526 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.317 |
| SRR2868004 | Drought Stress (root) | 10.700 |
| SRR2967015 | Control (root) | 11.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.318 |
| SRR9715740 | Leaf | 4.644 |
| SRR9715741 | Leaf | 4.652 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 6.134 |
| SRR9715743 | Root | 5.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.089 |
| SRR8749028 | MeJA induced 9h | 23.688 |
| SRR8749029 | MeJA induced 9h | 17.766 |
| SRR8749030 | Uninduced | 9.939 |
| SRR8749031 | Uninduced | 8.259 |
| SRR8749032 | Uninduced | 6.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.746 |
| SRR8400027 | Control - Root | 11.631 |