Gene detail information of Glyur000437s00025652 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80230.1 | 5.00E-13 | Rubredoxin-like superfamily protein |
| NR | NP_001240096.1 | 1.14E-30 | uncharacterized protein LOC100780886 [Glycine max] |
| Swissprot | tr|Q9SSB8|CX5B2_ARATH | 8.00E-23 | Cytochrome c oxidase subunit 5b-2, mitochondrial (Precursor) |
| trEMBL | tr|C6TAW8|C6TAW8_SOYBN | 4.00E-31 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G22410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 50472 | 56910 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.010 |
| SRR1783600 | control | 5.575 |
| SRR1783602 | moderate drought stress | 5.469 |
| SRR1811619 | moderate drought stress | 5.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.571 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.287 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.529 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.046 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.342 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.014 |
| SRR2868004 | Drought Stress (root) | 30.393 |
| SRR2967015 | Control (root) | 33.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.439 |
| SRR9715740 | Leaf | 12.356 |
| SRR9715741 | Leaf | 16.860 |
| SRR9715739 | Root | 20.882 |
| SRR9715742 | Root | 13.639 |
| SRR9715743 | Root | 13.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.080 |
| SRR8749028 | MeJA induced 9h | 12.564 |
| SRR8749029 | MeJA induced 9h | 14.967 |
| SRR8749030 | Uninduced | 5.789 |
| SRR8749031 | Uninduced | 2.135 |
| SRR8749032 | Uninduced | 5.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.397 |
| SRR8400027 | Control - Root | 25.384 |