Gene detail information of Glyur000437s00025651 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15620.1 | 0 | DNA photolyase family protein |
| NR | XP_004506890.1 | 0 | PREDICTED: (6-4)DNA photolyase-like [Cicer arietinum] |
| COG | NP_924695.1 | 4.00E-171 | photolyase [Gloeobacter violaceus PCC 7421] |
| Swissprot | tr|O48652|UVR3_ARATH | 0 | (6-4)DNA photolyase |
| trEMBL | tr|V7AU45|V7AU45_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07721.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00437 | 42590 | 47583 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000437s00025651.1 | PF00875.13 | DNA_photolyase | 6 | 159 | 1.30E-34 |
| Glyur000437s00025651.1 | PF03441.9 | FAD_binding_7 | 208 | 484 | 6.80E-101 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.106 |
| SRR1783600 | control | 0.107 |
| SRR1783602 | moderate drought stress | 0.073 |
| SRR1811619 | moderate drought stress | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.063 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.269 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.185 |
| SRR2868004 | Drought Stress (root) | 8.314 |
| SRR2967015 | Control (root) | 6.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.991 |
| SRR9715740 | Leaf | 25.413 |
| SRR9715741 | Leaf | 23.532 |
| SRR9715739 | Root | 0.144 |
| SRR9715742 | Root | 0.317 |
| SRR9715743 | Root | 0.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.707 |
| SRR8749028 | MeJA induced 9h | 5.142 |
| SRR8749029 | MeJA induced 9h | 4.480 |
| SRR8749030 | Uninduced | 2.898 |
| SRR8749031 | Uninduced | 1.547 |
| SRR8749032 | Uninduced | 2.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.706 |
| SRR8400027 | Control - Root | 2.242 |