Gene detail information of Glyur000436s00018465 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12800.1 | 0 | Nucleic acid-binding, OB-fold-like protein |
| NR | KHN23663.1 | 0 | 30S ribosomal protein S1 [Glycine soja] |
| COG | YP_008872676.1 | 7.00E-22 | RNA binding S1 protein [Candidatus Saccharibacteria bacterium RAAC3_TM7_1] |
| trEMBL | tr|K7L4D0|K7L4D0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G01570.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 129673 | 135386 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018465.1 | PF00575.18 | S1 | 590 | 661 | 4.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.780 |
| SRR1783600 | control | 1.845 |
| SRR1783602 | moderate drought stress | 2.171 |
| SRR1811619 | moderate drought stress | 2.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.357 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.483 |
| SRR2868004 | Drought Stress (root) | 7.523 |
| SRR2967015 | Control (root) | 10.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.761 |
| SRR9715740 | Leaf | 40.613 |
| SRR9715741 | Leaf | 20.941 |
| SRR9715739 | Root | 0.256 |
| SRR9715742 | Root | 1.826 |
| SRR9715743 | Root | 0.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.919 |
| SRR8749028 | MeJA induced 9h | 6.944 |
| SRR8749029 | MeJA induced 9h | 3.965 |
| SRR8749030 | Uninduced | 3.637 |
| SRR8749031 | Uninduced | 3.255 |
| SRR8749032 | Uninduced | 3.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.611 |
| SRR8400027 | Control - Root | 4.035 |