Gene detail information of Glyur000436s00018464 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G63260.2 | 6.00E-98 | tetraspanin10 |
| NR | XP_007160041.1 | 0 | hypothetical protein PHAVU_002G287500g [Phaseolus vulgaris] |
| Swissprot | tr|F4I214|TET10_ARATH | 3.00E-138 | Tetraspanin-10 |
| trEMBL | tr|V7CRY9|V7CRY9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32035.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 124565 | 128007 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018464.1 | PF00335.15 | Tetraspannin | 8 | 256 | 6.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.268 |
| SRR1783600 | control | 1.229 |
| SRR1783602 | moderate drought stress | 0.612 |
| SRR1811619 | moderate drought stress | 0.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.274 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.209 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.167 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.588 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.402 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.111 |
| SRR2868004 | Drought Stress (root) | 2.857 |
| SRR2967015 | Control (root) | 4.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.399 |
| SRR9715740 | Leaf | 0.069 |
| SRR9715741 | Leaf | 0.351 |
| SRR9715739 | Root | 0.538 |
| SRR9715742 | Root | 0.828 |
| SRR9715743 | Root | 0.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.732 |
| SRR8749028 | MeJA induced 9h | 0.312 |
| SRR8749029 | MeJA induced 9h | 2.914 |
| SRR8749030 | Uninduced | 0.606 |
| SRR8749031 | Uninduced | 0.117 |
| SRR8749032 | Uninduced | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.998 |
| SRR8400027 | Control - Root | 2.375 |