Gene detail information of Glyur000436s00018455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11650.1 | 2.00E-41 | osmotin 34 |
| NR | KEH21028.1 | 6.79E-94 | pathogenesis-related thaumatin family protein [Medicago truncatula] |
| Swissprot | tr|P31110|TLP_ORYSJ | 4.00E-65 | Thaumatin-like protein (Precursor) |
| trEMBL | tr|A0A072TVX9|A0A072TVX9_MEDTR | 3.00E-94 | Pathogenesis-related thaumatin family protein {ECO:0000313|EMBL:KEH21028.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 88944 | 89477 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018455.1 | PF00314.12 | Thaumatin | 28 | 145 | 5.10E-44 |
| Glyur000436s00018455.1 | PF00314.12 | Thaumatin | 146 | 177 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.774 |
| SRR1783600 | control | 0.735 |
| SRR1783602 | moderate drought stress | 1.833 |
| SRR1811619 | moderate drought stress | 1.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 163.486 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 158.004 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.104 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 238.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 245.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.507 |
| SRR2868004 | Drought Stress (root) | 8.874 |
| SRR2967015 | Control (root) | 9.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 919.830 |
| SRR9715740 | Leaf | 529.474 |
| SRR9715741 | Leaf | 1100.379 |
| SRR9715739 | Root | 38.294 |
| SRR9715742 | Root | 21.978 |
| SRR9715743 | Root | 23.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 113.894 |
| SRR8749028 | MeJA induced 9h | 77.144 |
| SRR8749029 | MeJA induced 9h | 90.032 |
| SRR8749030 | Uninduced | 37.286 |
| SRR8749031 | Uninduced | 35.618 |
| SRR8749032 | Uninduced | 87.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.547 |
| SRR8400027 | Control - Root | 4.077 |