Gene detail information of Glyur000436s00018452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11650.1 | 4.00E-76 | osmotin 34 |
| NR | XP_010053305.1 | 4.99E-130 | PREDICTED: protein NP24-like [Eucalyptus grandis] |
| Swissprot | tr|P25096|P21_SOYBN | 2.00E-110 | Protein P21 |
| trEMBL | tr|M0ZYP9|M0ZYP9_SOLTU | 2.00E-128 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400010890} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00436 | 77177 | 80394 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000436s00018452.1 | PF00314.12 | Thaumatin | 30 | 214 | 1.00E-68 |
| Glyur000436s00018452.1 | PF00314.12 | Thaumatin | 260 | 357 | 6.10E-36 |
| Glyur000436s00018452.1 | PF00314.12 | Thaumatin | 386 | 442 | 2.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.301 |
| SRR1783600 | control | 2.530 |
| SRR1783602 | moderate drought stress | 9.714 |
| SRR1811619 | moderate drought stress | 9.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.045 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.539 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.081 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 190.791 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 181.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.881 |
| SRR2868004 | Drought Stress (root) | 26.839 |
| SRR2967015 | Control (root) | 5.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 516.634 |
| SRR9715740 | Leaf | 276.965 |
| SRR9715741 | Leaf | 611.062 |
| SRR9715739 | Root | 28.544 |
| SRR9715742 | Root | 6.754 |
| SRR9715743 | Root | 10.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.562 |
| SRR8749028 | MeJA induced 9h | 326.361 |
| SRR8749029 | MeJA induced 9h | 149.064 |
| SRR8749030 | Uninduced | 160.910 |
| SRR8749031 | Uninduced | 134.173 |
| SRR8749032 | Uninduced | 254.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.850 |
| SRR8400027 | Control - Root | 67.636 |