Gene detail

Gene detail information of Glyur000436s00018445

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48680.1	1.00E-113	gamma carbonic anhydrase-like 2
NR	KEH21020.1	1.54E-171	gamma carbonic anhydrase-like protein [Medicago truncatula]
COG	YP_546585.1	5.00E-35	carbonic anhydrase family 3 [Methylobacillus flagellatus KT]
Swissprot	tr\|Q9SMN1\|GCAL2_ARATH	1.00E-144	Gamma carbonic anhydrase-like 2, mitochondrial (Precursor)
trEMBL	tr\|A0A072U593\|A0A072U593_MEDTR	6.00E-172	Gamma carbonic anhydrase-like protein {ECO:0000313\|EMBL:KEH21020.1}

Sequence

Transcript Sequence

>Glyur000436s00018445.1
GAAGCTCATTTCTCTGTCTCGGTTTTATTCACTCTTCCATTTTCCGGCTGCACTCTCGCAGCTCGTTCTCTCGCTCTCTCTCATGGCGAATCTAGCACGCTTCTCCAACAGAGCCCTAAGAAGCGCATACGCAATAACAAAGCACCACGTGCAACCGCGGCTGCCGGCAGCTGAACGCGCTTTTGCTACGGAGGCAGCGAAATCGGTAACTCCTTCGCCGGATCGGGTGAAATGGGACTACAGAGGGCAGAGGAAGATAATCCCGTTGGGGCAGTGGCTCCCCAAAGTGGCCGTCGATGCTTACGTGGCACCCAACGTGGTCCTCGCCGGCCAAGTCACCGTCTGGGACGGAGCCTCCGTCTGGCCGGGTTCCGTCCTCCGCGGCGATCTCAACAAGATCAGCATCGGATTCTGCTCCAATGTTCAGGAGCGCTGTGTCCTTCACGCTGCTTGGTCCTCTCCCACAGGCCTTCCGGCTGAGACTTTCATAGAGAGGTATGTGACTATTGGGGCATATAGCCTGTTGAGATCCTGCACTATTGAGCCAGAGTGCATCATTGGGCAGCACTCCATCCTCATGGAAGGTTCCTTGGTGGAGACACACTCAATTCTTGAAGCTGGGTCAGTGGTTCCTCCAGGAAGGCGAATTCCATCAGGTGAACTTTGGGCAGGAAATCCGGCCAGGTTTGTGAGGACTTTGACCCACGAAGAAACCTTAGAAATCCCCAAACTCGCAGTTGCAATAAACGATCTAAGCAGAGATCATTACTCCGAGTTCCTTCCCTATTCCACAGTATATTTGGAGGTTGAGAAGTTCAAGAAGTCCTTGGGTATTTCTATTTGATGCTCTTTGTTGTTATTCTAATATATGTGTCTGTTAGTTGGCGTTTTGCTTGTAAGGAAATAAGAATCTGAACACAGAGCAAGTTTTTGTGTTTTCTTTGTATTTCTTGCTGAAAGTATTGGCTTAAAGCATCATGTCCCATATAATTGACTGGAGTGATATGTTAAGAGATGAGATGCATTATCTGAGCTTTGGGCATTAGTTTTCGCTCCCAATTGGAACGGGTTCGCAGTTTCTCCCTTTTTGTCCTTGCTCCATTTAGGGATGCACTTCTCCATTACCTAGGAAAGGGTCTCGTTAGTTCTTTGACGAAGTAATGTTACTTGGCTTCAAGATTCGGTACTTAATTGTTTTCTTGTTAAAAGAATGCTCGTTGTATAAAGATGTNCTGTATCCGGTGCACAAAGGATGAGAGGTAATTCGAATTATCCTAAGAGCGATGCTGGTATACTTGTAATCTATAGCATACAAATACTTNAAAAGAGAAACAAGACACAATATTTCTGGGTCTGTAATCCTGTCTTGATGGGGAAAACCCGTTCAAGAGGCCTACGGTCACGAATAATCATGTTGATGTCGCTTTGGTCTTCAGAGTTAGCTTGAGGTAACTTGAAAGTTGAAACATTCATTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00436	44761	48358	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.149
SRR1783600	control	86.431
SRR1783602	moderate drought stress	141.157
SRR1811619	moderate drought stress	140.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	102.974
DRR006520	Root Summer glycyrrhizin high producing strain	102.063
DRR006521	Root Winter glycyrrhizin high producing strain	88.302
DRR006522	Root Winter glycyrrhizin high producing strain	86.201
DRR006523	Root Summer glycyrrhizin low producing strain	116.788
DRR006524	Root Summer glycyrrhizin low producing strain	116.842
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.545

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	91.214
SRR2868004	Drought Stress (root)	70.564
SRR2967015	Control (root)	73.774

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.310
SRR9715740	Leaf	39.535
SRR9715741	Leaf	39.857
SRR9715739	Root	171.477
SRR9715742	Root	113.865
SRR9715743	Root	122.351

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.801
SRR8749028	MeJA induced 9h	39.368
SRR8749029	MeJA induced 9h	64.266
SRR8749030	Uninduced	33.516
SRR8749031	Uninduced	20.216
SRR8749032	Uninduced	58.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	93.573
SRR8400027	Control - Root	92.480