Gene detail information of Glyur000435s00027250 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 7.00E-78 | chitinase A |
| NR | XP_004490140.1 | 0 | PREDICTED: acidic endochitinase-like [Cicer arietinum] |
| COG | YP_006916186.1 | 5.00E-12 | endo-chitinase chi18C [Simiduia agarivorans SA1 = DSM 21679] |
| Swissprot | tr|P29024|CHIA_PHAAN | 7.00E-130 | Acidic endochitinase (Precursor) |
| trEMBL | tr|G7JXV4|G7JXV4_MEDTR | 0 | Chitinase {ECO:0000313|EMBL:AES96955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00435 | 81187 | 82071 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH18 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000435s00027250.1 | PF00704.23 | Glyco_hydro_18 | 27 | 244 | 2.60E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.390 |
| SRR1783600 | control | 2.477 |
| SRR1783602 | moderate drought stress | 1.126 |
| SRR1811619 | moderate drought stress | 1.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 93.942 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 93.532 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 126.348 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.598 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.695 |
| SRR2868004 | Drought Stress (root) | 47.168 |
| SRR2967015 | Control (root) | 16.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.071 |
| SRR9715740 | Leaf | 0.066 |
| SRR9715741 | Leaf | 0.148 |
| SRR9715739 | Root | 190.934 |
| SRR9715742 | Root | 143.108 |
| SRR9715743 | Root | 131.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.036 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.795 |
| SRR8400027 | Control - Root | 20.597 |