Gene detail

Gene detail information of Glyur000435s00027245

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03430.1	2.00E-93	Ankyrin repeat family protein
NR	XP_004490141.1	3.32E-142	PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cicer arietinum]
COG	YP_002730162.1	1.00E-28	pfs, nacht and ankyrin domain protein [Persephonella marina EX-H1]
Swissprot	tr\|Q52T38\|ZDH22_ARATH	3.00E-17	Protein S-acyltransferase 24
trEMBL	tr\|I3RZ67\|I3RZ67_LOTJA	6.00E-140	Uncharacterized protein {ECO:0000313\|EMBL:AFK33309.1}

Sequence

Transcript Sequence

>Glyur000435s00027245.1
GTAAGATGATGTTAAATCTTTAACTCACACGATTCATTGCCATCGTATTAGTCAAACATAAAGTTCCTTGGAGAATAGGAAATGGAGATGGAAGTAGACAGTGAGAAGACACAAAAAGACATCAAAGAGAAGGATCTGTTCAAAGCTGCGGAAGAAGGAGACTCCTCACTCTTCGAAGCACTGTCCNCTCAAACACTCTCCAAAGCCCTCTCTCTCAGAAACGAAGACGCTCGCACCCTTCTCCACGTCGCCGCTTCTTCCGGCCACTCCCAGGTGGTGAAGATATTACTGTCTTCTGATGCATCTGCTGAGGTGATAAATAGTGCNGATGAAGAAGGGTGGGCACCGCTTCACTCTGCGGCCAGCATTGGGAGAGCTGATGTTAATCTGAAAAATGATGGGGGTCGCACTGCTTTACACTATGCTGCCAGCAAAGGTCGGATGAAGATTGCGGAAATACTCATATCCCATGATGCCAAGCTTAATATAAAGGACAAGGTTGGCTGCACCCCATTGCATCGGGCAGCTAGCACTGGGAATTCTGAGTTGTGTGAACTTTTGATTGAAGAAGGAGCAGAGGTTGATGCTGTTGACAGAGCTGGTCAAACTCCTCTAATGAATGCTGTGATTTGTCAGAACAAAGAGGTAGCCTTCCTTCTTATAAGGCATGGNGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACAGTACTTGGTCGAGCTTCAGATGAGTTTAGACCAACACTAATTGATGCTGCCAAGGCCATGCTTGAGTGATGATACAACAACTACTACAAGAAAAATGAGAAAAATTGTCATTCATGCAAAAGAGAGCAGTATGCAGTAAAGGAAGCTAAAGGAAGCAGTTTTCTGCTGAAGACCTGTTTTATGTGGATAAAAATTGCACTTGTATAATCTTTAGAAACACAAGGGAGAAGTTTACATTCTTGTTAAAAAAAATGATTCTCTGCCAGCCCCCATCTCCCCAAAACTCCTCATTTTGTTCTCCTTATTCATGGTCATAGAAAGAAACTATGCATGTGCTCTTTTATATATATATATATATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00435	50658	55010	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000435s00027245.1	PF13637.1	Ank_4	51	98	6.10E-09
Glyur000435s00027245.1	PF12796.2	Ank_2	99	171	4.50E-19
Glyur000435s00027245.1	PF00023.25	Ank	174	205	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.826
SRR1783600	control	46.269
SRR1783602	moderate drought stress	50.134
SRR1811619	moderate drought stress	49.628

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.981
DRR006520	Root Summer glycyrrhizin high producing strain	38.313
DRR006521	Root Winter glycyrrhizin high producing strain	71.218
DRR006522	Root Winter glycyrrhizin high producing strain	68.244
DRR006523	Root Summer glycyrrhizin low producing strain	27.743
DRR006524	Root Summer glycyrrhizin low producing strain	27.768
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	70.762
SRR2868004	Drought Stress (root)	67.878
SRR2967015	Control (root)	68.742

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.782
SRR9715740	Leaf	29.720
SRR9715741	Leaf	28.413
SRR9715739	Root	22.947
SRR9715742	Root	24.198
SRR9715743	Root	22.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	179.087
SRR8749028	MeJA induced 9h	84.645
SRR8749029	MeJA induced 9h	129.425
SRR8749030	Uninduced	47.320
SRR8749031	Uninduced	35.771
SRR8749032	Uninduced	26.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	73.947
SRR8400027	Control - Root	70.148