Gene detail

Gene detail information of Glyur000434s00017236

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08040.2	1.00E-110	MATE efflux family protein
NR	XP_004499881.1	0	PREDICTED: MATE efflux family protein FRD3-like [Cicer arietinum]
COG	YP_004100808.1	3.00E-24	MATE efflux family protein [Intrasporangium calvum DSM 43043]
Swissprot	tr\|Q9SFB0\|FRD3_ARATH	2.00E-158	MATE efflux family protein FRD3
trEMBL	tr\|G7IZF7\|G7IZF7_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000434s00017236.1
GTGGGGCAAAGGGTACTTATAAAAGGGGAGTGGTATGCAAGAATTAGAGTACCTGTGACCTTTGTTAGTAAGAAGAATCTTAGAGCTGGTGGAAAGGTTTGTGGTCAGTGGTCACCGACTTTGCATTCACTCTCTCTGAGGTCAAGGATCAAACATTTAGGAGCAGTCTCAGATTGTTGAGATTTGGCTCATCCTCAAGGGATTTATTTGCACCATATCCTCTTCTTGATTGTGCTCTTATCTAAGATTTAGGACATCATGGACGAGAATGGTACCGCAAATAGTGTCCTCAAGAACAAGTGGAAACTTCCTCTCTCAGTTTTCTTCAAAGATGCAAGGACCGGTGGAACTTGCTGCTGCAGGAGTTTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCATTTTCCCTCTAGTCAGTATTACAACTTCCTTTGTAGCTGAGGAAGATACTATTGAGAAAATCAATAATATGGCAGCAGAAAAGCAATTCACTGAAAGCATTAAGGCCAAGTCCAACGAAATAATGCCTGGTGACCATTTGCTCCAAGACATAGAAACAGGTGCATCCAAAGAGAACACCGAGACTCCTAAAGAATCTTTGGCCGTGGAAAAGGATGGTACCTTGAAAAATGAGACAAATAATGGAGATGCTAAACCTCTATTAGGTGCAATGGGTTTGAAACCTGATTCTCCTATGCTAAACCCAGCTGTAAAGTACTTGAGATTGAGATCCTTAGGTGCTCCTGCAGTGCTTCTATCCTTGGCCATGCAAGGAATCTTTCGAGGATTCAAGGACACAACAACTCCTTTATATGTCATTGTTTCTGGGTATGCATTGAATGTTGCTATGGACCCAATACTTATCTTTTACTGCAAATGGGGTATTAGAGGTGCAGCCATTTCACATGTGCTCTCTCAGTACATGATGGCATTGGCCCTCTTGTTGATATTAATGAAAAAGGTGGATCTCCTACCTCCAAGCATGAAGGATTTGCAGATTTTCAGGTTTCTTAAAAATGGAGGTCTATTGTTGGCCAGAGTGGTAGCAGTTACATTCTGTGTGACCTTGTCAGCCTCATTAGCAGCAAGGTTAGGTTCCATTCCTATGGCTGCATTCCAAACCTGCCTTCAGGTCTGGATGACATCATCCCTTCTTGCTGATGGTTTAGCTGTTGCAGTACAGGCAATTCTAGCATGTTCCTTTGCTGAGAAAGATTATGACAAGGTGACTGCTGCTGCAACACGGGCATTGCAAATGAGTTTTGTTTTAGGAATGGGACTCTCTCTTGTAGTTGGAGTTGGATTGTTCTTTGGAGCTGGAATCTTCTCCAAAAGTGTTCTTGTTATTCACTTAATCAAAATAGGCATCCCGGTCATGGTGTCATTAGCAAGTGTTGCTTCATTGTTCTTTTTCTACAAAAGTAAAGGTTTTGTTGGGATCTGGATTGCACTAACCATCTACATGAGTCTTCGCATGTTTGCTGGTGTATGGAGGATGGGAACAGGAACAGGACCTTGGCGTTTTCTGAGAGGNTACTCATTGTCTTGATGATATCTAACAAACAAAAATTTCATCGTTGTGCATCGCACACTTTTCATCATATAGGACCAATTCTCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	150310	158477	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017236.1	PF14667.1	Polysacc_synt_C	152	243	5.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.178
SRR1783600	control	2.010
SRR1783602	moderate drought stress	2.590
SRR1811619	moderate drought stress	2.706

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.535
DRR006520	Root Summer glycyrrhizin high producing strain	8.730
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.947
DRR006524	Root Summer glycyrrhizin low producing strain	10.782
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.701

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	94.965
SRR2868004	Drought Stress (root)	167.004
SRR2967015	Control (root)	47.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.235
SRR9715740	Leaf	1.141
SRR9715741	Leaf	1.117
SRR9715739	Root	2.163
SRR9715742	Root	11.440
SRR9715743	Root	9.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.892
SRR8749028	MeJA induced 9h	1.037
SRR8749029	MeJA induced 9h	1.265
SRR8749030	Uninduced	1.394
SRR8749031	Uninduced	0.263
SRR8749032	Uninduced	9.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.741
SRR8400027	Control - Root	5.425