Gene detail

Gene detail information of Glyur000434s00017235

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain
NR	XP_004499884.1	PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum]
Swissprot	tr\|P93755\|C3H30_ARATH	Zinc finger CCCH domain-containing protein 30
trEMBL	tr\|I1MJP7\|I1MJP7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G43030.1}

Sequence

Transcript Sequence

>Glyur000434s00017235.1
ATGTGCGGTGGTCCAGAGAAGCCAAAATCTCTTTCAACTTCATTTTCAGCAACAAGTTCAAATAACGTCGAAGAAATGAAAAACCTAATTATTCATACCGAAGATTCTTTTTCCAGCTTACTTGAATTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGCTTTAGATAGGGATACTTCTCTAATAAATGAAGTTGGGCTGTGGTATGTTCGTCAAAATGGATCCAAACAAATTGTTCTCGAGCATAGAACCCCTTTGATGGTTGCTGCTACATATGGGAGTATCGATGTTCTAAAGCTTATACTCTCATCTATGGAGGTGGACGTAAATTTCTCCTGTGGGGCTGATAAAAGCACTGCCCTTCATTGTGCTGCTTCGGGTGGTTCTGTTAATGCAATTGATGTTGTGAAGCTGCTTTTATCAGCCGGTGCTGATATCAGTTCCGTGGATGCTAATGGAAATCGTCCTGTTGATGTCATTGTTGTTCATCCTAAGCTTCAAGGTATGAAATCAATTCTTGAAGAACTTCTCTCAGATAGTGCTTCTGATGGGTCTGTTGATGACTGCTCTCTTCCATTATCTGTTAATTCATCAAGTCCTGGTTCAGCTGCTCCTTTATCATCATCACTTGAGAATGGGTTTCCATCCTCTCCCGTGGCTCTAAAGTTTACTGACGCAGCTGTTAATTCTACATCAGAAAAGAAAGAATACCCAATTGATCCAACACTTCCGGATATAAAGAACAGCATATATGCAACAGATGAATTTCGCATGTTTTCATTCAAAGTTCGTCCTTGCTCTCGTGCATACTCGCATGATTGGACTGAGTGTCCCTTTGTTCATCCTGGAGAGAATGCTCGCAGGAGAGACCCTAGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGAATTTAGAAAAGGGGCTTGTAGACGTGGTGATATGTGTGAATATGCTCATGGGGTATTTGAGTGCTGGCTACATCCAGCTCAGTATCGAACAAGGCTCTGCAAAGATGGTACTAGTTGTAATAGAAGGGTATGCTTTTTTGCTCACACACCTGAAGAGCTCCGTCCATTGTATGTGTCCACTGGATCTGCCGTCCCTTCACCCCGATCAACTGCCTCTGCTCCTAATGTCATGGACATGGCGGCTGCAATGAGCCTGTTCCCTGGTTCTCCATCATCAATCTCTTCTATGTCTCCATCTCCCTTTGCACAGCCAATGTCTCCATCTGCAAATGGCATCTCACACTCATCTACTGCCTGGCCACAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAACATTCAAACAAGTCGTTTGAGATCTTCTCTTAGTGCTCGTGACATGCCACCTCAAGACTTGAATCTGTTGCAAGACTTTGATGGCCAGCAACACATATTGAATGATTTGGGCTGTTTCTCACAGCCCCATCCTGGTGCCATTTCAGTGGGTCGGTCTGGTCGGTCTATGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCGTCTCCTCGGTATTCTGACCCATCAGCGGCTTCTGTGTTTTCCCCAACACACAAATCAGCTGTTCGCAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATTAACACAAATGTCCTGTCCCCTAAGAATGTTGAGCATCCTCTATTACAGGCTTCATTTGGCGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAATCCCTCTCTCCAATGAGTGCTCGACTATCAGCTTTTTCTCAGCGTGAGAAACAGCAGCAACAGCTGCGGAGCCTTAGTTCAAAAGATCTTGGTGCTAACAATCCTGCCTCAGTTGTTGGGTCCCCTATTAATTCCTGGTCTAAGTGGGGATCTCCTAATGGAAAAGCAGATTGGTCAGTGAATGGAAATGACCTAGGTCGATTGCAAAGATCATCCACTTTTGAGCTTGGAAACAATGGGGAAGAGCCTGATCTATCCTGGGTCCAATCTCTTGTCAAGGAATCCCCACCAGAAATGAAAGAGCAATTGGCAGTTTCTGGCCCTATTGCATCTGCTGAACTGAACTCTAATCCTCAGATAGAGTCCATTGATCATTCTGTTTTAGGAGCCTGGCTGGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	144655	146817	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017235.1	PF12796.2	Ank_2	87	174	1.50E-12
Glyur000434s00017235.1	PF00642.19	zf-CCCH	301	321	0.00013

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.810
SRR1783600	control	30.372
SRR1783602	moderate drought stress	30.269
SRR1811619	moderate drought stress	30.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.331
DRR006520	Root Summer glycyrrhizin high producing strain	21.210
DRR006521	Root Winter glycyrrhizin high producing strain	14.486
DRR006522	Root Winter glycyrrhizin high producing strain	13.950
DRR006523	Root Summer glycyrrhizin low producing strain	18.685
DRR006524	Root Summer glycyrrhizin low producing strain	19.411
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.533
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.752

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	65.371
SRR2868004	Drought Stress (root)	61.002
SRR2967015	Control (root)	43.815

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.529
SRR9715740	Leaf	37.002
SRR9715741	Leaf	26.158
SRR9715739	Root	30.434
SRR9715742	Root	36.864
SRR9715743	Root	33.040

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.202
SRR8749028	MeJA induced 9h	26.058
SRR8749029	MeJA induced 9h	12.609
SRR8749030	Uninduced	12.606
SRR8749031	Uninduced	5.839
SRR8749032	Uninduced	7.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.377
SRR8400027	Control - Root	43.788