Gene detail information of Glyur000434s00017233 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17030.1 | 3.00E-26 | F-box family protein with a domain of unknown function (DUF295) |
| NR | XP_003599197.1 | 6.61E-44 | F-box family protein [Medicago truncatula] |
| Swissprot | tr|Q3EBZ2|SKI23_ARATH | 2.00E-30 | F-box protein SKIP23 |
| trEMBL | tr|G7IWN5|G7IWN5_MEDTR | 2.00E-44 | F-box SKIP23-like protein {ECO:0000313|EMBL:AES69448.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00434 | 122256 | 122915 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.854 |
| SRR1783600 | control | 0.939 |
| SRR1783602 | moderate drought stress | 1.339 |
| SRR1811619 | moderate drought stress | 0.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.690 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.265 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.994 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.624 |
| SRR2868004 | Drought Stress (root) | 3.590 |
| SRR2967015 | Control (root) | 3.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.012 |
| SRR9715740 | Leaf | 3.171 |
| SRR9715741 | Leaf | 1.859 |
| SRR9715739 | Root | 8.974 |
| SRR9715742 | Root | 5.493 |
| SRR9715743 | Root | 5.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.268 |
| SRR8749028 | MeJA induced 9h | 1.426 |
| SRR8749029 | MeJA induced 9h | 1.271 |
| SRR8749030 | Uninduced | 0.805 |
| SRR8749031 | Uninduced | 0.149 |
| SRR8749032 | Uninduced | 0.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.251 |
| SRR8400027 | Control - Root | 4.426 |