Gene detail

Gene detail information of Glyur000434s00017226

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60830.1	3.00E-174	actin-related protein 7
NR	XP_003599235.1	0	Actin related protein [Medicago truncatula]
COG	YP_003266114.1	1.00E-30	actin/actin family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8L4Y5\|ARP7_ARATH	0	Actin-related protein 7
trEMBL	tr\|G7IWS3\|G7IWS3_MEDTR	0	Actin-related protein ARP4 {ECO:0000313\|EMBL:AES69486.1}

Sequence

Transcript Sequence

>Glyur000434s00017226.1
ATGGAAGCCGCAGTGGTCGACGCCGGCTCTAGACTCCTCAAAGCCGGTTTTGCAATTCCTGATCAAACTCCCGCATTGATAATTCCGAGCCAGATGAAACAAATGGCTGATGAGGGGTCAGTGGCTGATAACAATGACAATCCGCTTTTGGCGGAGGACATCGCCGTTGATCCGGTGGTGAGAGGTTATGTCAGAGATTGGGATGCCATGGAGGATTTGTTGCATTATGTTTTGTACACTGGCCTTGGATGGGAAATCGGCAACGAAGGACAAATACTCTTNACCGATCCACTTTGTACCCCTAAGGCTAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGANCAGGCAGTGTTGTCACTATATGCCGTGGGACGTATCTCTGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTAATTGAGGGTGCTGTTAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTNTTGATCTAACTAATTNCCTGGCTCAANAACTTGGCAAATCCAATCCGCTAGTGAATATCAGCATGTCTGATGTTGAGAAAATAAAACAGCAATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAGAAAACCCAAGATTCNTGCCCTGTGGAGACACATACCCTTCCTGACGGACAGGTGATAACAATTGGAAGAGAAAGATATACAATTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAAGCTCACGGCATTGTTGANCAGCTTGTCCGCACTATCTCAACTGTGTCATCTGATAATCATCGGCAACTTCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGCCTGGTTTTGAAGAGAGATTTCAGAAGGAATCTTTCCTAAGTTCATCTGCTGTTCGACCTACNCTGGTTAAGCCTCCNGAATACATGCCAGAAAATTTAACCATGTACTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGACTATGATGAAAATGGGCCTTCCATTGTTCACAAGAAATGCTTCTGAANGAATTCGTCTGCACGANCTCNTCAAACAGTCAGTTCCTTTACACTCNTATTAGAACATGTGGTAGGCCTTCATTTGACTTTAGATTCTAAATGCTAGTCTCGCTAGATGTCCAGGTGATTGTGCGATTTTAAAAACTGNAGTGGATCTCTATTAACTAAATGCAATCATATTTCCTCGCACGAGTGTCTCAGCATCAGATATAGACAATTTCAGTAAAATATTGGTCGGAAAAGATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	100907	105057	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006325 chromatin organization

GO:0032502 developmental process

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017226.1	PF00022.14	Actin	2	365	7.30E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.740
SRR1783600	control	2.616
SRR1783602	moderate drought stress	3.572
SRR1811619	moderate drought stress	3.494

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.945
DRR006520	Root Summer glycyrrhizin high producing strain	3.990
DRR006521	Root Winter glycyrrhizin high producing strain	2.423
DRR006522	Root Winter glycyrrhizin high producing strain	1.802
DRR006523	Root Summer glycyrrhizin low producing strain	3.505
DRR006524	Root Summer glycyrrhizin low producing strain	3.789
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.059

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.754
SRR2868004	Drought Stress (root)	12.352
SRR2967015	Control (root)	14.118

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.490
SRR9715740	Leaf	4.341
SRR9715741	Leaf	3.409
SRR9715739	Root	2.204
SRR9715742	Root	2.050
SRR9715743	Root	2.205

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.756
SRR8749028	MeJA induced 9h	7.206
SRR8749029	MeJA induced 9h	5.114
SRR8749030	Uninduced	1.867
SRR8749031	Uninduced	0.582
SRR8749032	Uninduced	1.543

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.682
SRR8400027	Control - Root	8.454