Gene detail

Gene detail information of Glyur000434s00017225

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47970.2	9.00E-167	Aldolase-type TIM barrel family protein
NR	XP_004499892.1	0	PREDICTED: tRNA-dihydrouridine synthase A-like isoform X1 [Cicer arietinum]
COG	YP_006918563.1	4.00E-84	tRNA-dihydrouridine synthase A [Simiduia agarivorans SA1 = DSM 21679]
trEMBL	tr\|V7BWG4\|V7BWG4_PHAVU	0	tRNA-dihydrouridine synthase {ECO:0000256\|PIRNR:PIRNR006621}

Sequence

Transcript Sequence

>Glyur000434s00017225.1
ATGTTTCGGTTATCCGGGTCATCCCATTGGGTTGGGCCTTTGTTGGCTGTGATGGTTGCAAATGACTATTTTCCTCCTTTGTTTAGTGTGGCTCCAATGATGGACTGGACAGACAATCACTACAGAACTCTTGCGCGCCTCTTATCGAAACATGCTTGGCTCTACACTGAGATGCTCGCGGCCGAAACTATTGTTTATCAAAAGGGTAATCTGGACAGATTTTTGGCGTATTCTCCAGATCAACATCCTATTGTGCTTCAAATTGGGGGCAGTAATTTAGAGAATTTGGCAAAAGCAACTGAACTTGCTAACGCATACTGCTATGATGAGATCAACTTCAATTGTGGATGCCCTAGTCCTAGAGTTGCTGGACGTGGATGCTTTGGCGCACGTCTTATGCTTGACCCAAAGTTTGTTGCTGAGGCTATTTCAATAATTGCTGCCAATACAAATGCACCTGTCAGTGTCAAATGTCGAATCGGTGTGGATGATCATGATTCATACAATGAATTATGTGATTTCATTTACAAGGTTTCTTCTCTGTCACCTGCTAAGCATTTCATAATTCACTCTAGAAAGGCACTGCTGAAAGGCCTCAGCCCAGCTGAAAATCGNAGTATTCCTCCGCTGAAATATGAATACTTTTATGGCCTCTTGCGTGACTTTCCTGACTTAACATTTACAATCAATGGTGGNATTACTAGTATTGATGAGATCAATGCAGCTCTAAAGGCTGGTGCTCATGGTGTTATGNTTGGACGTGCAGCATACAATAACCCTTGGCATATTTTGGGAAATGTTGACACTGCAATTTATGGTGTACCAAGTAATGGTCTTACACGTCGTCAGGTCCTTGAGAAATATCAAGTATATGGGGACTCNGTGTTGCGACAATATGGACTTGGGCCAACTGTGCGAGACATTGTGAAGCCTTTACTTGGTTTTTTCCATTCTGCGCCTGGGAATGGACTTTGGAAGCGCAAAGCAGATTCTGCTGTCCAAACTTGCATGACAGTTAAATCATTCTTTGAAGAAACCCTTGTAGCAATTCCAGACTCGGTCTTGGATTCACCTGTTGCGGAACCACCACCTGGTCGCAGAGATCTTTTTGCCAACATAGGCAGTTTATTACCTCCACCATACAGAACAGGAGAAGAGGATGCTGTATAAATCCAAACAGTTATACTTATATACTATATGCAAATGACTTGAAATGTAATCCATTCAATTCAATGTAGAAAGTTTTAAGTAAAAACTAGGGGATTACTATTCTTTGTGGCTTTTGCTTTTTCTGTTGATTTTGGTGAAATTAGTATTGTTATATCTGTTAAGAAGAATGTTGGGTGGCTTATATTACTTTATATCAGATAAGCCCGACCCCACCCCTATTAAAGAAAACAAAAATGTTAAAGCTACAATGTTCNCTTTTCTAGTCCTCCAGATTCGCATTACATAAGAAGCATATACACACGACACCAGGACCTCTAGGTTCCTCTATTATCAATTATTCAACGTGGCAATAACTTATTGGTCATTTCATGAATGAGATAAGATATCGCATGGTCCTACCACCAGGTCCCTTTTTCTTCTCTTGTGATTTACATCCATATATTCATTCTTCAATCCAACTACTTGCACCATAAAGGGTATAGCAAGGAGAGACCAAGTTCAGGATTTAGGATTACATCGTAGAAATGGCATCAATCACCATGACAGCCTCAATCCTTGGCTGCCCCGCCATCACCAACCGGTCTGCAGCGGTGAGGCAGAGGAGGCTCATCGTCANCGCTGCAAGAACAGTGGAAGGGGAAAAGATGGTCAGTTATGACAAGGAGGGCAGCAATGGAAGGAGGGACTTGATGTTTGCTGCTGCAGCTGCTGCTGTTTGCTCTGTTGCTGGGGTGGCAATGGCAGATGATGAACCTAAAAATGGTACCCCAGAAGCCAAGAAAAAGTATGCTCAAATTTGTGTCACTATGCCAACTGCAAGAGTTTGCCGCAAGTGAGTGGTGCTTGGGTTTTGGTTTACTTCTGTTGATTGGAAATGTACAATGGGGTTGTAATGTTTTGATTTCATTTTATCGTCATTGTACTAGTTGTTCATAAAAATATCAACTTTGCCTTTATCTCAACCAAGGAATTGGTTAACTAAATTTTTAGAATCTGTCACAATTTTTTTTTTCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	84764	92781	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008033 tRNA processing

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0017150 tRNA dihydrouridine synthase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017225.1	PF01207.12	Dus	30	335	2.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.193
SRR1783600	control	2.327
SRR1783602	moderate drought stress	2.347
SRR1811619	moderate drought stress	2.464

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.821
DRR006520	Root Summer glycyrrhizin high producing strain	3.836
DRR006521	Root Winter glycyrrhizin high producing strain	3.434
DRR006522	Root Winter glycyrrhizin high producing strain	3.591
DRR006523	Root Summer glycyrrhizin low producing strain	3.050
DRR006524	Root Summer glycyrrhizin low producing strain	3.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	301.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	299.549

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.204
SRR2868004	Drought Stress (root)	14.699
SRR2967015	Control (root)	8.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	142.200
SRR9715740	Leaf	126.059
SRR9715741	Leaf	100.211
SRR9715739	Root	0.751
SRR9715742	Root	2.432
SRR9715743	Root	2.280

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.041
SRR8749028	MeJA induced 9h	4.699
SRR8749029	MeJA induced 9h	4.616
SRR8749030	Uninduced	2.647
SRR8749031	Uninduced	1.410
SRR8749032	Uninduced	2.310

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.160
SRR8400027	Control - Root	9.073