Gene detail

Gene detail information of Glyur000434s00017224

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08010.1	7.00E-112	RNA binding
NR	AFK39146.1	0	unknown [Lotus japonicus]
trEMBL	tr\|I3SFV4\|I3SFV4_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39146.1}

Sequence

Transcript Sequence

>Glyur000434s00017224.1
ATGGCTACTACTCTGAGTTTCAACCCCACCAGAATCAGAACCCCAACCTTCAACTATTCCAACCACCCCTTCATCACCAAACTCATCGCCTCCTCAAAACCCACCACCATCAGAATCCCATGCAACAACAACGTTATCAGAAACAACCCAAGACAGCTACTTCACTTTCGAACCAGCTCGGTGTCAGAGAGCTCAGTNTCTACGACCCAGAAAGAAGACGAAGAGGATGATGAAAACGAAGATGACCCAACTGCGGAAACGTGCTATCTGGACCCCGAAACCGAGCCAGAGGGGATAACAGAATGGGAACTGGACTTCTGCTCCAGGCCCATTCTTGATGCCAGAGGCAAGAAGTTATGGGAGCTTGTTGTGTGTGACAAATCCCTCTCACTNCAATACACCAAGTATTTCCCAAACAATGTCATCAATAGCATCACTCTCAAGGATGCTATTGTTACCATTTGTGACGAGTCACAGATGCAGACAATTATTACAAAAGCATGTAAGGAGCTTGGCATAAGAGCTGTTCCTAGTAAACGGTGCTTGTCGTTGCTTCTATGGCTAGAGGAACGCTATGAGACCGTATATATGAGGCACCCTGGATTTCAAAAAGGATCCATGCCTCTTCTGCCACTAGAGAATCCTTTTCCCACAAAACTTCCAGACGAGCTTTTTGGGGAAAGATGGGCATTTGTCCAATTACCTTACTCAGCTGTCCGAGAGGAGGTCTCATCCTTAGAGGCAAGATTTGGCTTAGGTTCTGGCCTAGATCTTGATTTATTGGGTATTGAAATTGATGACAAGACATTGATCCCAGGGCTGGCTGTTGCGTCTTCTCGTGCTAAAATATTATCAGCTTTTACAAATGGATTGGAGCTCTGTGCTGTGGAAGCAGACACTTCCCGTGCCAACCTGGTTCTCTCAGTTGGAATTTCTACTCGGTATGTATATGCCACCTATAAGAAAACTCCTACCACAACAAAAGAAGCTGAAGCATGGGAAGCAGCTAAGAAAGCTTGTGGAGGTTTGCATTTCCTTGCAATCCAAGATGAGTTAGATTCTGAAAATTGTGTTGGCTTCTGGCTTTTGCTAGACTTGCCACCTCCACCTGTATAATCGTACAAATGGTTATGGTTGAATATTCAAGAACAAAAATATTATAATAGAATTATTAGAATCCAGAAGTTTCTCTATCGAATTCTAGCTAAATTGGCCAACGAAAGTTTTGTAGCATTATTTGATTATTCATGAATATTATGTTGGTCTGAGTGGAACTGGGTTTGAACTCCTTAAGCAAGGCCTTAGGTTCGAGCCGTGTGGATGGAAAAAACGTGATTGGGAGGAAAGGCACCACTAAGGTGGTTAGCCAAGTTCTCTGGCAAAGATCAGTCGACGAAGCTGGTGGATACTTCACACAGATATCATGGTGACTCCCAAAAAAAAAAGCATGGAGAATATTGAATGAATTGATGTTTATCAGGAGAAAAAAAAAAAGAGGTGCAAAGGTCAACTTGTAATTGATTTGTTTTGCATGGTATGGTTGTTTCTGTTGCATGGTAGTGCGCAGAACCAGGATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	80390	84629	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017224.1	PF06485.6	DUF1092	102	364	4.50E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.319
SRR1783600	control	1.187
SRR1783602	moderate drought stress	0.926
SRR1811619	moderate drought stress	0.860

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.833
DRR006520	Root Summer glycyrrhizin high producing strain	1.845
DRR006521	Root Winter glycyrrhizin high producing strain	1.685
DRR006522	Root Winter glycyrrhizin high producing strain	1.671
DRR006523	Root Summer glycyrrhizin low producing strain	2.513
DRR006524	Root Summer glycyrrhizin low producing strain	2.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	94.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	95.080

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.717
SRR2868004	Drought Stress (root)	6.119
SRR2967015	Control (root)	2.780

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.418
SRR9715740	Leaf	82.142
SRR9715741	Leaf	51.618
SRR9715739	Root	0.361
SRR9715742	Root	1.284
SRR9715743	Root	1.327

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.014
SRR8749028	MeJA induced 9h	2.539
SRR8749029	MeJA induced 9h	0.953
SRR8749030	Uninduced	0.630
SRR8749031	Uninduced	0.091
SRR8749032	Uninduced	0.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.118
SRR8400027	Control - Root	1.963