Gene detail information of Glyur000434s00017218 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08030.1 | 9.00E-140 | Protein of unknown function, DUF642 |
| NR | AFK34548.1 | 0 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S2Q6|I3S2Q6_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK34548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00434 | 57445 | 59850 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000434s00017218.1 | PF04862.7 | DUF642 | 31 | 185 | 4.80E-57 |
| Glyur000434s00017218.1 | PF04862.7 | DUF642 | 196 | 363 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 220.867 |
| SRR1783600 | control | 222.414 |
| SRR1783602 | moderate drought stress | 34.617 |
| SRR1811619 | moderate drought stress | 34.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 86.871 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 86.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.750 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.026 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.877 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 174.501 |
| SRR2868004 | Drought Stress (root) | 59.120 |
| SRR2967015 | Control (root) | 79.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.130 |
| SRR9715740 | Leaf | 0.131 |
| SRR9715741 | Leaf | 3.636 |
| SRR9715739 | Root | 76.169 |
| SRR9715742 | Root | 24.684 |
| SRR9715743 | Root | 31.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.872 |
| SRR8749028 | MeJA induced 9h | 1.900 |
| SRR8749029 | MeJA induced 9h | 5.260 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 187.393 |
| SRR8400027 | Control - Root | 174.163 |