Gene detail

Gene detail information of Glyur000434s00017215.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13710.2	8.00E-93	sterol methyltransferase 1
NR	KCW66085.1	1.29E-156	hypothetical protein EUGRSUZ_G03364 [Eucalyptus grandis]
COG	YP_001277818.1	3.00E-22	type 11 methyltransferase [Roseiflexus sp. RS-1]
Swissprot	tr\|Q6ZIX2\|SMT1_ORYSJ	9.00E-118	Cycloartenol-C-24-methyltransferase 1
trEMBL	tr\|A0A059BK57\|A0A059BK57_EUCGR	5.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:KCW66085.1}

Sequence

Transcript Sequence

>Glyur000434s00017215.1
ACACAGTATGTTGTCCAATTCATGAAGTTTTCCCTCTTTCTCTTCCTTTTGTCTTTTAAATAATAATAATAATTGATAATTAATAAGCGCCCCTATCCAATCCAATCCATCACTTAAAAGCTTCCCACTTTTTAGTTTTTTCTGTCTCTCACTCTCACTCTCACTCTCACTCTCACACACGCCCTTTAATTACTTACCACATCGAGCCGCGAAAGGCACCGGAAGCTGCAGCTATGGATTTGGCATCCAATCTCGGTGGCAAGATCGACAAAGACGAAGTCCTCTCCGCAGTTGAGAAGTATGAGAAGTACCATGTATGCTATGGAGGTCAAGAGGAAGAAAGGAAAGCTNACTATAGTGATATGGTTAATAAGTACTATGATCTTGTTACCAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCACCCAGATGGAAAGGGGAATCTCTTAGAGAGAGCATCAAGAGACATGAGCACTTCCTTGCTTTACAGCTTGGCCTGGAGCCTGGACAGAAGGTTTTGGATGTTGGGTGTGGAATTGGGGGACCATTAAGAGAAATTTCACGATTTAGCTTGACATCAATTACAGGGTTGAATAACAATGAGTACCAGATAACAAGAGGAAAGGAACTCAATCGCATTGCCGGAGTGGACAAGACTTGCGACTTTGTCAAGGCCGACTTCATGAAAATGCCATTCCCAAACAATAGTTTTGATGCAGTATATGCAATTGAAGCCACCTGCCATGCACCAGATGCTGTAATATGGGAAAAAGATCTAGCAGTGGACTCTCCCCTTCCTTGGTACTTGCCTTTAGACAAGAGTCACTTCTCACTTAGTAGCTTCCGCCTAACAGCTGTTGGAAGACTTTTCACCAAAAATTTGGTCAAGGCTCTGGAGTTTGTTGGACTGGCTCCCAAGGGGAGTCTAAGGGTTCAAGATTTCCTAGAGAAGGCTGCAGAGGGCCTGGAAAGAGATTTTCACACCAATGTACTTCTTTTTGGCACGAAAGCCTAATTCAGAGAGTAACTAAATTGGTGGTGCAAATGGGTTGTTGTTTTCATGAGTTACCGTGATTATGGAAGAAAGAATTGTAAGTTGGTATTATATTGGGAAAAACCTCTTAGATTGTCTTCAGCCTTTCCATCATGAGTCTTGCTGTTTTAAGTTGCTTGTTTATTTAGATTGCCAAGATTTCNCCTTGTTTCTTGTTCGGTGAAGCAGTGTAACTCCTGCATTGCTGGATAGTGTAGTACTTACCCAATATGGCTACACTTTCATGTCATAGTTGTTTATCCTATAGATAGATTATTAGGTATTTTAAATTAGAAACCAGAAAGACAGGTAGAGTTATTCAGAAGTTGAATTAAGTCAAATTATTATTATTATTATTTATAAAAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	41580	46794	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00559	E2.1.1.41, SMT1, ERG6	EC:2.1.1.41	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006694 steroid biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017215.1	PF08241.7	Methyltransf_11	99	177	7.30E-13
Glyur000434s00017215.1	PF08498.5	Sterol_MT_C	204	248	1.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	103.548
SRR1783600	control	104.116
SRR1783602	moderate drought stress	41.999
SRR1811619	moderate drought stress	41.434

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.701
DRR006520	Root Summer glycyrrhizin high producing strain	44.969
DRR006521	Root Winter glycyrrhizin high producing strain	1.227
DRR006522	Root Winter glycyrrhizin high producing strain	1.116
DRR006523	Root Summer glycyrrhizin low producing strain	29.364
DRR006524	Root Summer glycyrrhizin low producing strain	28.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.427

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	103.393
SRR2868004	Drought Stress (root)	67.812
SRR2967015	Control (root)	80.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.424
SRR9715740	Leaf	5.349
SRR9715741	Leaf	13.800
SRR9715739	Root	38.628
SRR9715742	Root	70.918
SRR9715743	Root	69.495

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.080
SRR8749028	MeJA induced 9h	20.128
SRR8749029	MeJA induced 9h	10.930
SRR8749030	Uninduced	3.661
SRR8749031	Uninduced	0.958
SRR8749032	Uninduced	2.290

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	112.885
SRR8400027	Control - Root	135.866