Gene detail

Gene detail information of Glyur000434s00017212

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53170.1	9.00E-170	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003599420.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q9SCP4\|PP279_ARATH	0	Pentatricopeptide repeat-containing protein At3g53170
trEMBL	tr\|G7J0V1\|G7J0V1_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES69671.2}

Sequence

Transcript Sequence

>Glyur000434s00017212.1
ATGGCGCTTCACCCCAAGTGTCTGACATGGTCATCTTCCATCTCCTCCACAACACCCACCACCCGTTCGACGCAATTCACAAACGAGAACCACGNCAACGCTCCAAACTCACCTCTTCCTTTCCGCGTCCAATTGCTGAAGCGGCGCCCGAAACCTGCGTCAGAAGGGCTCCAGAGGGACCCCAAGAAGGACCTGTCCCGCATTCTCCGAACCGAAGCGGCTATCAGAGGCATCCACAACAAAGCCCAATCCTTGAAGNACGAGCACAAACAGCTGTGGCCCAAAGCTGTTCTCGAAGCATTGGATGAGGCCATCAAAGGGTGTCAATGGCAGACTGCTCTCAAGATTTTTGNGCTTCTTCGTAAGCAATGTTGGTATGAACCAAGATGCCGAACATATACAAAGCTGTTAATGATGCTTAGCAAGTGCAAGAAGCCTCAAGAGGCTAGTCGGCTCTTTGAGATCATGTTGTCTGAAGGGCTTAAACCTACTGTTGATGTCTTCACTGCTCTTGTAAGTGCTTATGGTCAAAGTGGTCTCCTTCATGAGGCATTTTCTACTATTGAAGATATGAAATCAGTTGTTGACTGCAAACCAAATGTATATACATATTCTATTCTTATCAGTTGCTGTGCAAAATTTCACCGTTTTGATTTAATTGAACAAGTTCTCGCGGAGATGTCATATCTGGGCATTGAATNTAATAGTGTGACATATAATTCCATAATTGATGGATATGGTAAGGCTGGCATGTTCGAACACATGGAGAATTCATTGACAGATATGATTGAAAATGACAATTGCCAACCAGATGTTTTCACACTGAATTCTTTTATAGGATCGTATGGAAATGGTGGGCAAATTGATAAGATGGAGAAGTGGTATGATGAATTTCAGTTAATGGGCATAAAGCCAGACACAAAGACATTCAATATGATGATAAAGTCCTATGGAAAAGCAGGCATGTATAATAAGATGAAGACTGTGATGGATTTCATGGAGAGGAGGNTTTTCACTCCGACAATTGTAACACATAATACTGTCATTGAGGTTTATGGCAAAGCTGGAGAAATTGAGAAGATGGATAAATACTTTAAGAAAATGAAGCATTTAGGAGTGAAGCCTAATTCTGTAACTTATTGCTCACTTGTCAATGCATATAGCAAAGCTGGGCGTATTGACAAAGTTGACTCAATCTTGAGGCATGTAGAAAATTCTGATGTAGTGTTAGATACTCCNTTCTTTAATTGCATAATTAGTGCCTATGGTCAGGCTGGTGACTTAAAAAAGATGGGTGAGTTATTCTTGGCAATGAGAGAGAGAAAATGTGAGCCAGATAGCATTACCTTCGCTTGCATGATCCAGGCTTACAATACCCAAGGCATGACTGAGGCTGCTAAAAACTTGGAAAACATGATGATTGCTGTCGAAGATAACTTTGGTATGTTGCAACTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	33847	35971	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017212.1	PF01535.15	PPR	132	161	0.0015
Glyur000434s00017212.1	PF13041.1	PPR_2	167	213	1.20E-11
Glyur000434s00017212.1	PF13041.1	PPR_2	235	280	5.00E-09
Glyur000434s00017212.1	PF01535.15	PPR	309	336	0.00075
Glyur000434s00017212.1	PF13041.1	PPR_2	340	389	3.20E-12
Glyur000434s00017212.1	PF13041.1	PPR_2	414	457	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.248
SRR1783600	control	2.284
SRR1783602	moderate drought stress	1.912
SRR1811619	moderate drought stress	1.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.678
DRR006520	Root Summer glycyrrhizin high producing strain	3.564
DRR006521	Root Winter glycyrrhizin high producing strain	2.192
DRR006522	Root Winter glycyrrhizin high producing strain	2.225
DRR006523	Root Summer glycyrrhizin low producing strain	5.299
DRR006524	Root Summer glycyrrhizin low producing strain	5.465
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.170
SRR2868004	Drought Stress (root)	4.981
SRR2967015	Control (root)	3.894

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.065
SRR9715740	Leaf	5.937
SRR9715741	Leaf	9.116
SRR9715739	Root	2.959
SRR9715742	Root	4.944
SRR9715743	Root	4.582

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.682
SRR8749028	MeJA induced 9h	1.261
SRR8749029	MeJA induced 9h	0.731
SRR8749030	Uninduced	0.175
SRR8749031	Uninduced	0.079
SRR8749032	Uninduced	0.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.455
SRR8400027	Control - Root	5.014