Gene detail information of Glyur000434s00017211 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13700.1 | 0 | polyamine oxidase 1 |
| NR | XP_004499921.1 | 0 | PREDICTED: polyamine oxidase 1-like [Cicer arietinum] |
| COG | YP_005086783.1 | 4.00E-41 | Flavin-containing amine oxidase domain-containing protein 1 [Pseudovibrio sp. FO-BEG1] |
| Swissprot | tr|Q9FNA2|PAO1_ARATH | 0 | Polyamine oxidase 1 |
| trEMBL | tr|V7BV40|V7BV40_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW20893.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00434 | 16773 | 26840 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13366 | MPAO, PAO1 | EC:1.5.3.14 1.5.3.16 1.5.3.- | Arginine and proline metabolism | map00330 |
| beta-Alanine metabolism | map00410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000434s00017211.1 | PF01593.19 | Amino_oxidase | 16 | 86 | 1.40E-14 |
| Glyur000434s00017211.1 | PF01593.19 | Amino_oxidase | 267 | 484 | 1.10E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.268 |
| SRR1783600 | control | 0.321 |
| SRR1783602 | moderate drought stress | 0.296 |
| SRR1811619 | moderate drought stress | 0.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.201 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.067 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.067 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.308 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.916 |
| SRR2868004 | Drought Stress (root) | 11.933 |
| SRR2967015 | Control (root) | 8.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.762 |
| SRR9715740 | Leaf | 0.516 |
| SRR9715741 | Leaf | 1.151 |
| SRR9715739 | Root | 0.504 |
| SRR9715742 | Root | 0.465 |
| SRR9715743 | Root | 0.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.334 |
| SRR8749028 | MeJA induced 9h | 1.210 |
| SRR8749029 | MeJA induced 9h | 3.274 |
| SRR8749030 | Uninduced | 0.996 |
| SRR8749031 | Uninduced | 0.888 |
| SRR8749032 | Uninduced | 2.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.999 |
| SRR8400027 | Control - Root | 2.576 |