Gene detail

Gene detail information of Glyur000434s00017209.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13690.1	0	alpha-N-acetylglucosaminidase family / NAGLU family
NR	XP_004499942.1	0	PREDICTED: alpha-N-acetylglucosaminidase-like [Cicer arietinum]
COG	YP_005009197.1	6.00E-83	Alpha-N-acetylglucosaminidase, Alpha-L-fucosidase [Niastella koreensis GR20-10]
trEMBL	tr\|K7LI90\|K7LI90_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G11720.3}

Sequence

Transcript Sequence

>Glyur000434s00017209.1
CATGGATCCTCTGTTTTGTTTCTCACACTGTTGAGATCACTCGGTTCCTTTCTCTGGGAAGAAGAATGTTGAAGTTCAACCATCCGTCTCCGTCTCCGTTTCTGATTCTGTTTCTGCTGCTGATTCCAACGTTTTTATTGCCCGTGGCACTGTCTAGGTATGAAGCCATAGAGCCTTTGCTTCAGCGCCTGGACTCCAAANGGGCACCTCCTTCCCTGCAAGAAGCCGCAGCCAGAGGTCTTCTCAAAAGACTGCTTCCTACCCACTTGTCCAGTTTTGAGCTCAAGATTGTTTCTAAGGATGTTTGTGGTGGAGACACTTGTTTTATAATAAACAATCACAACAAATCAAGCCAGAATGGGCCTGAGATTATCATTAGAGGAACCACAGCTGTTGAGATTGCATCTGGCCTCCATTGGTATCTTAAGTATTTGTGCGGTGCTCATGTCTCTTGGGATAAAACAGGTGGTATTCAGACAGCTTCAATCCCCAAGCCAGGGTCACTACCTGTTTTGAAAGATGAGGGTCTGAAGATTAAACGCCCTGTTCCATGGAACTATTACCAAAATGTTGTGACTTCTAATTCATTTGTTTGGTGGGATTGGGAAAGGTGGGAAAAAGAGGTAGACTGGATGGCACTTCAGGGAGTGAACCTGCCCTTGGCATTCACTGGGCAGGAAGCGATCTGGCAAAAGGATTTTAACATTAGTTCAGAAGATTTGAATAATTTCTTTGGTGGACCTGCTTTCCTTGCTTGGGCCCGCATGGGAAATTTACATGGATGGGGTGGGCCTTTATCTCAAAATTGGTTGGATCAACAATTGGCCTTACAGAAACAGATAATCTCTCGAATGCAGGAGCTAGGGATGACTCCAGTATTGCCATCCTTCTCTGGAAATGTTCCGGCTGCTTTGACAAAGATATTCCCTTCAGCAAAAATAACTAGACTTGGTGACTGGAACACTGTTGATGGTGATCCTCGCTGGTGCTGTACATACCTTCTTGATCCCTCCGATCCTCTATTTGTTGAAATTGGGGAAGCTTTTATCAGGAAACAAATTAAAGAATATGGGGATGTAACAGACATCTACAACTGTGACACGTTTAACGAAAATTCCCCACCTACCAGTGATCCGGCCTATATATCAACTCTTGGAGCTGCAGTATATGAAGGCATTTCCAAGGGTGACAAAGATGCTGTGTGGTTAATGCAAGGCTGGCTCTTCTACTCTGATTCATCATTTTGGAAGCCACCTCAAATGAAAGCACTTTTACATTCTGTTCCATTTGGGAAGATGATTGTTCTTGATCTATTTGCCGATGTAAAACCAATATGGAAAACTTCGTTTCAGTTTTATGGTACTCCTTATATATGGTGCATGCTACATAATTTTGGTGGTAATATTGAAATGTACGGTATTTTGGATGCAATTTCTTCAGGGCCTGTTGATGCCCGTGTCAGTGCAAACTCAACAATGGTAGGCGTTGGTATGTGCATGGAAGGAATAGAGCACAATCCTATTGTTTATGAGCTGATGTCTGAAATGGCATTTCGTGATGAGAAAGTTAAAGTTCCGGAATGGCTCAAGAGTTATTCCTATAGACGATATGGTAAAGCCATTCATCAAGTTGACACGGCTTGGGAGATCCTTTATCATACAATTTACAATTGTACTGATGGAATTGCTGATCATAACCATGATTTTCTTGTAATGCTTCCTGACTGGGACCCATCAACACATTTTGAATCTGGCAAATCAAACCACCAGAAGAAGATTTACTTCTTGCCACCTGGAAATAGAAGATACTTATCCCAGGAAACACCAAATGATATGCCACAGGCTCATTTGTGGTATCCTCCTGAAGACGTAATCAAGGCACTACAACTATTCCTAGCCGGCGGAAAGAATCTCACAGGAAGTCTCACATATAGGTATGACCTGGTCGACTTAACACGGCAAGTATTATCGAAATTGGCAAACCAAGTATACATCGAGGCAGTTGCTTCTTTTCAGAAGAAGAATATTGATGCTTTGCACCATCACAGCTATAAGTTCCTTCAACTGATAAAAGATATTGATTTATTGCTCGCTTCAGATGATAACTTCCTTCTTGGAACTTGGCTTGAGAGTGCCAAGAAACTGGCAGTGAATCCACGTGAGATGAAGCAGTATGAATGGAATGCCAGGACGCAAGTGACTATGTGGTTTGATACCAATGAAACTACTCAGAGCAAGCTCCACGATTATGCTAACAAATTTTGGAGTGGACTTCTGGAAAGTTACTATCTCCCACGAGCTTCAACCTATTTTAGTCATTTGTTAGAAAGCTTGAGACAGAATGAGAAATTCAAGTTGGTTGAGTGGAGAAAACAATGGATTTCAATGTCAAACAAATGGCAGGAAGGGAATGAGCTATACCCAGTAAAGGCCAAAGGAGATGCTCTATCCATCTCACAAACTCTCTATGAAAAGTATTTTGCAAAATAATTTGATAAATCAAAGAGGCTGGAGATTTTGCAGTACAGAAAACGATTTGCATTATTCCATATATCTGTGATATACAAGTAAATATTAGGCACTGGCTGTCGTTTTCCTGTCATGTTTGCAATTTTTCTGCCAACAGTTTCAACTGATTTATGTACCTGCAATTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00434	2938	13993	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH89

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01205	NAGLU	EC:3.2.1.50	Glycosaminoglycan degradation	map00531
			Lysosome	map04142

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000434s00017209.1	PF12971.2	NAGLU_N	52	149	3.70E-25
Glyur000434s00017209.1	PF05089.7	NAGLU	165	499	1.70E-138
Glyur000434s00017209.1	PF12972.2	NAGLU_C	505	804	5.30E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.908
SRR1783600	control	13.992
SRR1783602	moderate drought stress	25.980
SRR1811619	moderate drought stress	26.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.569
DRR006520	Root Summer glycyrrhizin high producing strain	11.741
DRR006521	Root Winter glycyrrhizin high producing strain	25.040
DRR006522	Root Winter glycyrrhizin high producing strain	24.326
DRR006523	Root Summer glycyrrhizin low producing strain	15.388
DRR006524	Root Summer glycyrrhizin low producing strain	15.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.044
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.075

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.167
SRR2868004	Drought Stress (root)	42.630
SRR2967015	Control (root)	45.149

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.827
SRR9715740	Leaf	23.855
SRR9715741	Leaf	23.515
SRR9715739	Root	6.842
SRR9715742	Root	9.954
SRR9715743	Root	9.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.055
SRR8749028	MeJA induced 9h	54.483
SRR8749029	MeJA induced 9h	28.695
SRR8749030	Uninduced	42.478
SRR8749031	Uninduced	28.415
SRR8749032	Uninduced	32.864

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.370
SRR8400027	Control - Root	28.418