Gene detail information of Glyur000432s00027018 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57880.1 | 0 | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein |
| NR | XP_004497931.1 | 0 | PREDICTED: uncharacterized protein LOC101499168 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9ZVT9|C2GR1_ARATH | 1.00E-11 | C2 and GRAM domain-containing protein At1g03370 |
| trEMBL | tr|A0A072TGP1|A0A072TGP1_MEDTR | 0 | C2 calcium/lipid-binding and GRAM domain protein {ECO:0000313|EMBL:KEH16148.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00432 | 134011 | 137678 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000432s00027018.1 | PF00168.25 | C2 | 92 | 171 | 1.90E-20 |
| Glyur000432s00027018.1 | PF00168.25 | C2 | 254 | 335 | 5.50E-14 |
| Glyur000432s00027018.1 | PF00168.25 | C2 | 416 | 491 | 2.20E-13 |
| Glyur000432s00027018.1 | PF08372.5 | PRT_C | 670 | 825 | 5.90E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.974 |
| SRR1783600 | control | 4.995 |
| SRR1783602 | moderate drought stress | 2.999 |
| SRR1811619 | moderate drought stress | 2.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.414 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.397 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.869 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.903 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.636 |
| SRR2868004 | Drought Stress (root) | 9.906 |
| SRR2967015 | Control (root) | 9.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.520 |
| SRR9715740 | Leaf | 0.372 |
| SRR9715741 | Leaf | 0.817 |
| SRR9715739 | Root | 5.015 |
| SRR9715742 | Root | 4.422 |
| SRR9715743 | Root | 3.610 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.102 |
| SRR8749028 | MeJA induced 9h | 0.834 |
| SRR8749029 | MeJA induced 9h | 1.003 |
| SRR8749030 | Uninduced | 0.103 |
| SRR8749031 | Uninduced | 0.015 |
| SRR8749032 | Uninduced | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.679 |
| SRR8400027 | Control - Root | 15.052 |