Gene detail information of Glyur000432s00027015 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06850.1 | 0 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| NR | XP_003635987.1 | 0 | Multiple C2 and transmembrane domain-containing protein [Medicago truncatula] |
| Swissprot | tr|Q9ZVT9|C2GR1_ARATH | 1.00E-11 | C2 and GRAM domain-containing protein At1g03370 |
| trEMBL | tr|G7ZV87|G7ZV87_MEDTR | 0 | Multiple C2 and transmembrane domain-containing protein {ECO:0000313|EMBL:AES83125.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00432 | 101056 | 103455 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000432s00027015.1 | PF00168.25 | C2 | 58 | 138 | 5.10E-18 |
| Glyur000432s00027015.1 | PF00168.25 | C2 | 223 | 301 | 8.50E-12 |
| Glyur000432s00027015.1 | PF00168.25 | C2 | 385 | 479 | 3.10E-17 |
| Glyur000432s00027015.1 | PF08372.5 | PRT_C | 644 | 799 | 7.60E-81 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.945 |
| SRR1783600 | control | 1.009 |
| SRR1783602 | moderate drought stress | 1.089 |
| SRR1811619 | moderate drought stress | 1.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.349 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.332 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.511 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.488 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.934 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.739 |
| SRR2868004 | Drought Stress (root) | 5.169 |
| SRR2967015 | Control (root) | 5.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.688 |
| SRR9715740 | Leaf | 3.635 |
| SRR9715741 | Leaf | 2.460 |
| SRR9715739 | Root | 0.528 |
| SRR9715742 | Root | 4.018 |
| SRR9715743 | Root | 2.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.557 |
| SRR8400027 | Control - Root | 1.701 |