Gene detail information of Glyur000432s00027005.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57810.3 | 5.00E-77 | Cysteine proteinases superfamily protein |
| NR | XP_004497941.1 | 0 | PREDICTED: OTU domain-containing protein At3g57810-like [Cicer arietinum] |
| Swissprot | tr|Q8LBZ4|OTU_ARATH | 1.00E-93 | OTU domain-containing protein At3g57810 |
| trEMBL | tr|A0A072VIC0|A0A072VIC0_MEDTR | 0 | OTU-like cysteine protease {ECO:0000313|EMBL:KEH41567.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00432 | 21258 | 26573 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | OTU |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000432s00027005.1 | PF02338.14 | OTU | 182 | 308 | 2.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.417 |
| SRR1783600 | control | 7.558 |
| SRR1783602 | moderate drought stress | 10.391 |
| SRR1811619 | moderate drought stress | 10.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.196 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.538 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.273 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.060 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.416 |
| SRR2868004 | Drought Stress (root) | 10.414 |
| SRR2967015 | Control (root) | 9.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.754 |
| SRR9715740 | Leaf | 22.412 |
| SRR9715741 | Leaf | 21.663 |
| SRR9715739 | Root | 8.864 |
| SRR9715742 | Root | 11.210 |
| SRR9715743 | Root | 8.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.091 |
| SRR8749028 | MeJA induced 9h | 8.283 |
| SRR8749029 | MeJA induced 9h | 12.454 |
| SRR8749030 | Uninduced | 8.995 |
| SRR8749031 | Uninduced | 6.557 |
| SRR8749032 | Uninduced | 10.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.231 |
| SRR8400027 | Control - Root | 11.312 |