Gene detail information of Glyur000432s00027003 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12180.1 | 9.00E-41 | Cornichon family protein |
| NR | AFK49488.1 | 3.93E-95 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9C7D7|CNIH1_ARATH | 1.00E-50 | Protein cornichon homolog 1 |
| trEMBL | tr|I3TAE6|I3TAE6_LOTJA | 1.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:AFK49488.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00432 | 14959 | 19818 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000432s00027003.1 | PF03311.9 | Cornichon | 1 | 128 | 9.60E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.007 |
| SRR1783600 | control | 10.055 |
| SRR1783602 | moderate drought stress | 8.912 |
| SRR1811619 | moderate drought stress | 8.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.738 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.688 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.695 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.772 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.308 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.587 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.415 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.276 |
| SRR2868004 | Drought Stress (root) | 8.189 |
| SRR2967015 | Control (root) | 9.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.679 |
| SRR9715740 | Leaf | 6.958 |
| SRR9715741 | Leaf | 4.865 |
| SRR9715739 | Root | 2.392 |
| SRR9715742 | Root | 4.836 |
| SRR9715743 | Root | 3.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.929 |
| SRR8749028 | MeJA induced 9h | 3.919 |
| SRR8749029 | MeJA induced 9h | 5.039 |
| SRR8749030 | Uninduced | 2.103 |
| SRR8749031 | Uninduced | 0.234 |
| SRR8749032 | Uninduced | 0.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.463 |
| SRR8400027 | Control - Root | 14.357 |