Gene detail

Gene detail information of Glyur000431s00018647

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G11910.1	aspartic proteinase A1
NR	XP_007215237.1	hypothetical protein PRUPE_ppa004349mg [Prunus persica]
Swissprot	tr\|O65390\|APA1_ARATH	Aspartic proteinase A1 (Precursor)
trEMBL	tr\|M5WT67\|M5WT67_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16436.1}

Sequence

Transcript Sequence

>Glyur000431s00018647.1
GGGACTGGTAGTTGACGGTTGCGAGATGGAATAAACGAGTTTGCTTGGAGAGTGATCACTCTGTTAGTGTTACCTTCTTACTCTCTCTGTTTTTCTCGCCGCTATCTCTTTGCTCTGTCTCACTCTGCTCAGCACTCAAAATGGGTTCGAAATATAGTTTTTTGGTTGCGCTGCTCTTGTTACTTCTCCACCCTGTGGTTCTATCTGGACCTACTAATGGAATAATCAGAATTGGATTGAAAAAGAACAAATTAGATCAAAACAACATGCTTACAAGACATATTGTTTCCGAGGAAAGAGAAACATTGGGAGACGCCAGGCCTCTTGGTGGCTATGAAAATTCAGATGACACAAGTATTATCCGGTTAAAGAACTATATGGATGCTCAGTATTTTGGTGAGATTGGTATTGGGACTCCTCCTCAGAAATTTACTGTAATATTTGACACTGGAAGTTCCAATCTTTGGGTTCCTTCCTCTAAGTGTTACTTTTCAGTTGCTTGTTATTTGCACTCAAGATACAAGTCAAGCCAATCTAACACTTACAGCAAAAATGGGACATCAGCTGAAATCCATTATGGAACTGGGCAAATTTCAGGTTTCTTTAGCCAGGACCATGTCAAGGTTGGAGATTTGATTGTTCAAAACCAGGATTTTATTGAGGCAACCAGAGAGCCTAGCCTCACATTTTTGGCAGCCAAATTTGACGGCATTCTGGGGTTAGGATTTCAAGAGATATCTGTTCAGAATGCTGTTACTGTCTGGGATAATATGCTCAANCAACATCTTCTAGCACAACCAGTATTTTCATTCTGGTTAAACCGCAATACTGATGGGGAAGAAGGGGGTGAGATTGTATTTGGTGGAGTTGATTCTGATCATTACAAGGGTGAGCACACATATGTTCCAGTTACCCGGAAAGGATTCTGTGCTACTGGTTGCTCTGCAGTTGCTGATTCTGGAACCTCTGTGTTAGCTGGCCCAACCGCTGTTATTGCTCAAATCAATCATGCAATTGGAGCGGCTGGTGTTGTGAGNCAAGAATGCAAGGCAGTGGTTGCACAATATGGAAAAACCATATTGGATAAACTGATAAATGAGGCTTTGCCACAACAGGTCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAACTGTGAGTATGGGCATTCAGAGTGTGGTTGATGATAAGAACATAGAGAAGACATCTAATAGTTTGAGTGATGCTGGATGCACTGTTTGTGAGATGGCTGTGGTATGGATAAAAAACCAGCTACGATTAAATGAGACAGAAGAACAGATCTTAGACTATGTCACCTCGCTCTGTGATCAGCTTCCCAGCCCAAATGGAGAATCAGTAGTTGAGTGCAGAACTCTTTCTGAGATGCCTAATGTTTCATTCACCATTGGGGGCAAAGTGTTTGAACTTTCCCCAGAGCAGTATATTNTTAAAATTGGAGAAGGAGCCACAACACAATGCCTTAGTGGATTTATAGCTTTAGACATTGCTCCTCCTCGTGGACCTCTTTGGATTCTGGGGGACATTTTCATGGGTCGCTATCACACAGTGTTCGATTATGGAAATTTGAGAGTTGGATTTGCTGAATCAGCATAGAGCTGTTATGTGCATTGTAAAATAATTCCATGATCAATTTCCCCATAATATGATAAATTAAATAACGAAGTCGGAGTAATAATGTACAATTTCAAAATCTAGTTTTTGTACAATACACAGTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00431	110353	115617	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006629 lipid metabolic process

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000431s00018647.1	PF00026.18	Asp	83	490	2.10E-116
Glyur000431s00018647.1	PF03489.12	SapB_2	300	333	3.40E-11
Glyur000431s00018647.1	PF05184.10	SapB_1	364	401	8.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.491
SRR1783600	control	0.493
SRR1783602	moderate drought stress	0.166
SRR1811619	moderate drought stress	0.129

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.124
DRR006520	Root Summer glycyrrhizin high producing strain	0.123
DRR006521	Root Winter glycyrrhizin high producing strain	0.221
DRR006522	Root Winter glycyrrhizin high producing strain	0.249
DRR006523	Root Summer glycyrrhizin low producing strain	0.035
DRR006524	Root Summer glycyrrhizin low producing strain	0.126
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.147
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.985

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.591
SRR2868004	Drought Stress (root)	10.288
SRR2967015	Control (root)	9.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.613
SRR9715740	Leaf	18.583
SRR9715741	Leaf	16.456
SRR9715739	Root	0.215
SRR9715742	Root	0.035
SRR9715743	Root	0.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.235
SRR8749028	MeJA induced 9h	0.154
SRR8749029	MeJA induced 9h	0.561
SRR8749030	Uninduced	0.127
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.247

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.291
SRR8400027	Control - Root	2.346