Gene detail

Gene detail information of Glyur000431s00018645.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55090.1	1.00E-83	mitogen-activated protein kinase kinase kinase 15
NR	XP_004487421.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Cicer arietinum]
COG	NP_248764.1	3.00E-27	serine/threonine protein kinase PpkA [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|O22040\|ANP1_ARATH	3.00E-52	Mitogen-activated protein kinase kinase kinase ANP1
trEMBL	tr\|A2Q4H0\|A2Q4H0_MEDTR	0	Protein kinase {ECO:0000313\|EMBL:ABN08520.1}

Sequence

Transcript Sequence

>Glyur000431s00018645.1
ATGGAGATGGAGTGGACTAGAGGCATCACCATAGGACATGGCTCATCAGCCACCGTCTACCTCGCCACCTCCCGCCGCTCCTCCTCCGATGTCTCTGCCGTGAAGTCGGCGGAAATATCCTCTCTATCAAAGTCAGAACAACTGCAGAGAGAACAGAGGATCCTCTGTTCTCTGTCCTCTCATCCTCACATAGTTAGCTACAAAGGCTGCAATATTACAAAGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCATTCGGAAATCTCTCTCAGGCAACTCTCCGGCACGGCGGTGGCAGGCTCGAGGAGCCTGCAGTAGCACACTACGCAAGGCAAATTGTGATGGGGCTTGAGTACTTGCATGCAAATGGGGTCGTGCATTGTGACATTAAAGGAAGCAACATATTGGTTTCTCAAGATGGGGTTGTTAAAATTGGAGACTTNGGATGTGCCAAGCGTGTGNGTGTGAATGAGAATGACCTGACGGCTGCGGCTGCGGTGGCGATCGGTGGCACGCCGATGTTCATGGCGCCGGAGGTGGCACGTGGGGAGGAACAGGGGTACCCTTGTGATGTTTGGGCACTTGGGTGCACAGTGGTTGAAATGGCNACTGGGTTTGCACCGTGGCCTAATGTGGAAGACCCTGTTTCGGTTCTGTACCGTGTTGCATATTCTGGTGAGTCCCCTGAGATTCCCTGTTTTCTTTCAGAGCAAGCNAAGGATTTCTTGGGGAAGTGCTTTAGGAGGGACCCGAAGGAGAGGTGGAGTTGTAGTCAATTGCTGAAGCATCCATTTCTTGCGGAATTCGATTCCAATAATAATAATAATGCCAAGGGATTATTGAATAATAATAATTCAAGTTCTTCACCAACGAGTATTCTTGAGCAAGGCTTTTGGAATTNTGTGGTGGAAGAAGAGTCAGAGTCAGAATCAGAATGCTTCCTTTTTGATAATTTGGGTATTGAGAATTCTCCTGCTGGTAGGATCAAAAGGCTAGCTTTGTGTTCAGGGGATCCAAATTGGACATGGGGTGATGAGAATTGGATCACAACTAGAGGGAATGATGCAGGGGCTGCTTCAAGTTCAACGAGTGATTGGTATGATTTGGATGAGTTAGAGAGAAGTGATGNTAGTGGTAGAATTAGTGGTTATAATATTTGTGAGGATTATGATTGTAATAGGGATGTTAGTGTGGTAGTTAATAGTCTCAATTTTGAGAGAGGCATTGCATTTGCGCAGATGCTACTCCCTTCAACATTAGATNTTTTATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00431	104891	106174	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000431s00018645.1	PF00069.20	Pkinase	9	270	4.20E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.096
SRR1783600	control	1.074
SRR1783602	moderate drought stress	0.848
SRR1811619	moderate drought stress	0.829

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.575
DRR006520	Root Summer glycyrrhizin high producing strain	2.530
DRR006521	Root Winter glycyrrhizin high producing strain	0.521
DRR006522	Root Winter glycyrrhizin high producing strain	0.509
DRR006523	Root Summer glycyrrhizin low producing strain	2.152
DRR006524	Root Summer glycyrrhizin low producing strain	2.582
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.642
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.625

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.786
SRR2868004	Drought Stress (root)	3.374
SRR2967015	Control (root)	2.591

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.440
SRR9715740	Leaf	1.916
SRR9715741	Leaf	12.795
SRR9715739	Root	1.595
SRR9715742	Root	2.977
SRR9715743	Root	1.540

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.241
SRR8749028	MeJA induced 9h	0.595
SRR8749029	MeJA induced 9h	0.073
SRR8749030	Uninduced	0.049
SRR8749031	Uninduced	0.060
SRR8749032	Uninduced	0.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.220
SRR8400027	Control - Root	2.783