Gene detail

Gene detail information of Glyur000431s00018643

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76160.1	0	SKU5 similar 5
NR	XP_006447580.1	0	hypothetical protein CICLE_v10014842mg [Citrus clementina]
COG	YP_129196.1	3.00E-10	hypothetical protein PBPRA0983 [Photobacterium profundum SS9]
Swissprot	tr\|Q00624\|ASOL_BRANA	0	L-ascorbate oxidase homolog (Precursor)
trEMBL	tr\|A0A067EHS2\|A0A067EHS2_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO54689.1}

Sequence

Transcript Sequence

>Glyur000431s00018643.1
CTGTGACACTATTTTCAAAGACACTGAAATGGATACAGCTCATAGAGATAGCCTGGTCCATTACTCATGCCATGTTGAAGAATCCCCTCGTTCTCTCTCTCTCTCCCCCCTACACNGACATAGCACTACCACAATCTTCTNATCTCATATGGGTCTATAAAGCTCCAACACCAAAGCCAAAGGGAAAAGAAAAGTGTAGCCGTGTTGTACTTAGAAGAANGGTGAAGCTGAGAGAGTACTCCTTTTCCCATATCCACATCTGTGCTTAGAGTTAGAGAGTTTTGGAGAAATGGGGTATCTCTCATTGTTACTAGTGTTGCTGCTGGTGACACGTGCAAGTGGGGAGGACCCTTATAGGTTCTATACTTGGAATGTTACCTATGGAGACATCTATCCTCTTGGGGTTAAACAACAGGGGATATTGATAAATGGGCAGTTCCCAGGACCACAGATTGAATCCGTGACCAATGATAACTTGATCATCAATGTTTTCAATAGCTTGGATGAACCTTTCCTTATTTCTTGGAATGGGGTGCAGCAGAGGAGGAATTCATGGCAGGATGGAGTATGTGGCACTAACTGTCCAATCCCAGCAGGGAAGAACTTCACTTATGTTCTTCAAGTGAAGGATCAGATTGGTAGCTACTTCTACTTCCCTTCCCTTGCATTCCACAAGGCAGCAGGTGGTCATGGTGGCTTCAAAATTGCCAGCCGCCCCATGATTCCTGTCCCTTTTCCTCCACCAGCAGGAGATTTCACCATATTGGCAGGAGACTGGTACAAGAGAAATCACACTGTAAGCAAGACTTACAGATTCCGGATATCAAATGTTGGACTCACAACTTCCATCAATTTCAGAATACAAGGGCATAAGATGCGGCTAGTTGAAGTGGAAGGAATCCACACACTTCAAAACACTTACGATTCCATTGACATTCATTTGGGGCAGAGTTACTCTGTATTGGTCACTGCTGATCAACCGCCCCGAGACTATTACATCGTTGTCTCAACACGATTCACCTCCCAAGTCTTGACTGCTACCTCCATACTTCATTACAGTAACTCAGCAGGAAGTGTTTCTGGTCCTCCCCCAGGAGGCCCCACAACTCAAATTGATTGGTCTCTTGAACAAGCTCGCTCTCTCAGGCGAAATTTGACAGCAAGTGGACCAAGACCTAATCCACAAGGGTCTTACCATTATGGTTTGATAAACACAACCCGTACAATTAGGCTCCAAAACTCTGCACCAGTTATCAATGGCAAGAAGAGATATGCTGTCAATAGTGTTTCCTTCATCCCTGCNGATACACCACTCAAACTGGCTGATTACTTCAAGATCCCAGGAGTATTCAGCCTTGGAAGTATCCAAGACAACCCCACTGGTGGCGGCGGTTACCTCCAGACTTCTGTCATGGCTGCCGATTTCCGAGGCTATGTAGAGATTGTGTTTGAAAATCCGGAAGACAGTTTGCAATCTTGGCACATTGATGGCCATCACTNCTTTGTTGTAGGAATGGATGGAGGCCAATGGTCAACTGCAAGCAGGTTAAATTACAATCTGAGAGACACAATATCTCGTTGCACAGTTCAGGTGTATCCCAAGTCATGGACTGCAGTGTACATGCCTTTGGACAATGTGGGGATGTGGAATGTGAGGTCAGAGAATTGGGCTCGTCAGTACTTGGGGCAGCAATTTTACCTTCGTGTGTATTCCCCTGCCAATTCATGGAGAGATGAGTACCCAATTCCAAGTAATGCTCTGCGGTGTGGCCGTGCTGTGGGCCATTAAAGCCACACCTTTATTCAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00431	98645	102534	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000431s00018643.1	PF07732.10	Cu-oxidase_3	28	142	1.30E-35
Glyur000431s00018643.1	PF00394.17	Cu-oxidase	171	258	7.50E-30
Glyur000431s00018643.1	PF07731.9	Cu-oxidase_2	340	475	9.50E-24
Glyur000431s00018643.2	PF07732.10	Cu-oxidase_3	28	142	1.30E-35
Glyur000431s00018643.2	PF00394.17	Cu-oxidase	171	258	7.50E-30
Glyur000431s00018643.2	PF07731.9	Cu-oxidase_2	340	475	9.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.576
SRR1783600	control	6.539
SRR1783602	moderate drought stress	6.187
SRR1811619	moderate drought stress	6.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.827
DRR006520	Root Summer glycyrrhizin high producing strain	0.760
DRR006521	Root Winter glycyrrhizin high producing strain	0.738
DRR006522	Root Winter glycyrrhizin high producing strain	0.697
DRR006523	Root Summer glycyrrhizin low producing strain	0.789
DRR006524	Root Summer glycyrrhizin low producing strain	0.950
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.619
SRR2868004	Drought Stress (root)	6.902
SRR2967015	Control (root)	6.139

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.241
SRR9715740	Leaf	3.060
SRR9715741	Leaf	0.271
SRR9715739	Root	7.965
SRR9715742	Root	1.613
SRR9715743	Root	2.300

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.646
SRR8749028	MeJA induced 9h	48.983
SRR8749029	MeJA induced 9h	24.332
SRR8749030	Uninduced	12.288
SRR8749031	Uninduced	2.998
SRR8749032	Uninduced	5.939

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.198
SRR8400027	Control - Root	19.848