Gene detail information of Glyur000431s00018642 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04090.1 | 1.00E-44 | small and basic intrinsic protein 1A |
| NR | AFK49451.1 | 1.08E-116 | unknown [Lotus japonicus] |
| COG | YP_007146029.1 | 5.00E-08 | MIP family channel protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q5VR89|SIP11_ORYSJ | 1.00E-73 | Aquaporin SIP1-1 |
| trEMBL | tr|I3TAA9|I3TAA9_LOTJA | 4.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:AFK49451.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00431 | 93162 | 94204 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000431s00018642.1 | PF00230.15 | MIP | 2 | 224 | 4.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.832 |
| SRR1783600 | control | 1.748 |
| SRR1783602 | moderate drought stress | 1.642 |
| SRR1811619 | moderate drought stress | 1.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.318 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.297 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.252 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.306 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.028 |
| SRR2868004 | Drought Stress (root) | 21.100 |
| SRR2967015 | Control (root) | 11.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.776 |
| SRR9715740 | Leaf | 2.412 |
| SRR9715741 | Leaf | 3.674 |
| SRR9715739 | Root | 7.110 |
| SRR9715742 | Root | 2.540 |
| SRR9715743 | Root | 3.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.524 |
| SRR8749028 | MeJA induced 9h | 0.045 |
| SRR8749029 | MeJA induced 9h | 0.410 |
| SRR8749030 | Uninduced | 0.749 |
| SRR8749031 | Uninduced | 0.144 |
| SRR8749032 | Uninduced | 1.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.837 |
| SRR8400027 | Control - Root | 9.219 |