Gene detail

Gene detail information of Glyur000431s00018635

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16970.1	5.00E-52	alkenal reductase
NR	XP_003540299.1	0	PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Glycine max]
COG	YP_003953479.1	8.00E-69	oxidoreductase, zinc-binding protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9SLN8\|DBR_TOBAC	5.00E-82	2-alkenal reductase (NADP(+)-dependent)
trEMBL	tr\|I1LU49\|I1LU49_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G31970.1}

Sequence

Transcript Sequence

>Glyur000431s00018635.1
TCCCTTTATAAAAAAGGGAAAAGAAAAAGCCATGTCCATATGTAAATCAATCAATCAATCATTGCAATTTGCAGCGGAAGTAGTAGCTGGCTAGACTAGAACTAGAAAGTGGAAAACAATGGGGAGCGTGGTGGAAAGCAGAGAATGGTACTTGGCTGCTTATTCCACCGACGGTGTTCCAACCTCCGATCATCTCAAACTCCGCACCGTCCCTCTTTCTGTGGCCTCCGATTCAATCCCCGATGGCCATCTCGCCCTCGAAACCCTCTTCCTCTCCGTAGATCCTTACCTCCGCACCAGACTCACCGGCACCCTCGACGGCCTTTACATCCAGCAATATCAGCTCAATCAGGTGATCACAGCATTTGCAGTTGTACGGGTAATAGCATCAAAGGACANTAAATACAGGGAGGGGGATCTTCTTTTGGTTCCTTCCGCTCCCGTCGCTGAGTACTGCATCGTGCCTTCCTCTCAGATACTTCGAAAAATTGATGCCGCTAGTGGGATTTCATTGCCCGATTATCTTAGTTCTTTAGGAGTACCAGGATTTGCGGCATGGGTGGGGATNGAGGTGCTGGGAGACCCCAAACCTGGATCAAATGTGTTCATATCTGCTGCGTCCGGTGCGGTTGGTATGAGTGCTGGCCAGTTGGCTAAGATCCGTGGTTGTAGGGTCATCGGAAGCACTGGGTCTGATGAAAAGGTGAAGCTTATTAAAGAGGAATTTGGGTATGACGATGGCTTCAACTACAATAAGGAATCAGATTATGATGCCGCTTTAAGCAAATACTTTCCTGATGGCATTGATGTTTACCTCGACAACGTTGGCGGTAAAATGCTTGAAGCTGTACTTAACCATGTCAACAAGCACGCTAGGATACCACTTTGCGGAATGATATCCCAATATAATAAGGTTTGGACTGAAAGAGAAGGAGTCAGGAATCTTCTGAATATGGTGGGCAAGGAGGTGAGGATGGAGGGTTTTATGCTAGAATCGTATTGGCATCGTTTTGGAGATTTTGCTAGAGATATGGAGGGATACTTAAAAGATGGCAAGGTTAAGTCTAAGAATAAAATAAATATTGGAATTGAGAGCTTTTTGGATAGCTTAAGCTCCCTATTCTCTAGCTCCAATATTGGAAAACTGCTCGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00431	44529	49101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000431s00018635.1	PF00107.21	ADH_zinc_N	170	293	5.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	122.586
SRR1783600	control	123.768
SRR1783602	moderate drought stress	166.800
SRR1811619	moderate drought stress	166.387

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.004
DRR006520	Root Summer glycyrrhizin high producing strain	41.783
DRR006521	Root Winter glycyrrhizin high producing strain	5.779
DRR006522	Root Winter glycyrrhizin high producing strain	5.402
DRR006523	Root Summer glycyrrhizin low producing strain	37.485
DRR006524	Root Summer glycyrrhizin low producing strain	37.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.847
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.088

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.551
SRR2868004	Drought Stress (root)	12.236
SRR2967015	Control (root)	18.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.897
SRR9715740	Leaf	13.503
SRR9715741	Leaf	17.594
SRR9715739	Root	85.914
SRR9715742	Root	97.289
SRR9715743	Root	100.536

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.989
SRR8749028	MeJA induced 9h	7.311
SRR8749029	MeJA induced 9h	5.790
SRR8749030	Uninduced	3.359
SRR8749031	Uninduced	0.347
SRR8749032	Uninduced	1.903

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	137.377
SRR8400027	Control - Root	122.461