Gene detail

Gene detail information of Glyur000429s00022710

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G60190.1	DYNAMIN-like 1E
NR	XP_004510142.1	PREDICTED: dynamin-related protein 1E-like [Cicer arietinum]
Swissprot	tr\|Q9FNX5\|DRP1E_ARATH	Dynamin-related protein 1E
trEMBL	tr\|I1KJE0\|I1KJE0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G12850.1}

Sequence

Transcript Sequence

>Glyur000429s00022710.1
CGTCCACGCTATATCACCACCGCGCCTTCCTGCGCCCCCTCCCTACGAAGTACGAACGTGACTTTACTTGTCCACAAAGGCGCCAATCGCTCTCTCGCTTCTCTCCGATTTTCTCTCTTCACAAGTCTCCGTTTGCGAAAATCTAGGGTTTCAAGAGTTCACAGTAGCAGCTGAACATCATCATGACGACCATGGAGAGCTTGATTGGGTTGGTGAACAGAATCCAGCAAGCTTGCACGAAGCTCGGTGACTATGGCGGCGGTTCCGACAACAACAACAACGCCTTCTCTTCTCTCTGGGAAGCTCTCCCTTCCGTCGCCGTCGTCGGTGGCCAGAGTTCGGGTAAGTCTTCGGTTTTGGAGAGCATTGTTGGACGTGACTTTCTACCTAGAGGATCAGGGATTGTGACGAGGCGTCCATTGGTGTTGCAGCTTCATAAGATAGATGATGACGCACACGAGTATGCTGAGTTTCTTCACAGACCAGGGAGAAAGATAACCGATTTTGCCCTAGTCCGTCAGGAAATTCAGGATGAAACTGATAGGATAACGGGAAAGACAAGGCAAATATCTCCTGTTCCAATTCATCTTAGCATTTATTCTCCACATGTTGTCAACCTAACTTTGATTGATTTACCGGGGTTGACTAAAGTTGCTGTAGAGGGACAGCCTGAGGGTATTGTTCAAGATATTGAAAATATGGTTCGATCTTATGTTGAGAAGCCTAATTCTATCATATTGGCTATATCNCCGGCCAATCAGGACATAGCAACTTCTGATGCTATCAAACTTTCCAGGGAAGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTAACAAAGCTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGAAGATCTTATCGTCTGCAACATCCTTGGGTTGGTGTAGTGAATCGATCCCAAGCAGATATCAATAAAGATGTTGATATGATTGTTGCCAGACNCAAGGAGCGNGAGTATTTTGCAACCAGTCCTGACTATGGTCACTTAGCCAATAAAATGGGTTCAGAATACCTAGCAAAACTTCTCTCACAGCACTTGGAGTCAGTAATTAGGGCACGGATACCTAGTATAACATCTTTGATAAACAAAAGCATTGAAGAACTTGAATCAGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCTGGGGCTCAACTATACACCATCCTAGAACTTTGCCGCAAATTTGAACGGAATTTCAAGGAGCATTTAGATGGAGGGCGGTCAGGAGGAGATAGGATATACAATGTCTTTGACAATCAGCTTCCTGCTGCTCTACGGAAGCTTCCGATTGACCGACATCTTTCTCTTCAGAATGTGAAGAGAGTGGTGTCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGGCGCCTGATTGAGGGGGCTCTTGGTTACTTTAGAGGCCCAGCTGAGGCTTCAGTTGATGCAGTCCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTGAGGAACTGAGACGCTTCCCTACTCTTCAAGCCGAATTAGCTGCAGCTACTAATGAGGCTTTAGAGAGGTTCCGTGAAGAGAGTAAGAAGACAACTATCCGGCTTGTGGATATGGAATCTTCATATCTCACTGCGGAGTTCTTCCGGAAACTTCCTCAAGAAATGGAGAAAGCTGGAAACCCAGCTCAGCCAAATAATCCAAATAATCCAGCTGTCTCAAATGTGGATCGATATGGAGAGGGGCATTTTAGGAGGATTGGATCAAATGTGTCATCCTATATAGGTATGGTGTCCGACACACTCAGGAACACGATTCCAAAGGCTGTGGTTTATTGTCAAGTCAGAGAAGCAAAACTGTCATTGCTAAACTTTTTCTACACACAAATAGGGAAGAAAGAGGCTAAACAGCTATCACAGTTGTTAGACGAAGACCCTACCGTGATGGAGAGAAGACAACAATGTTTTAAAAGACTTGAACTATATAAAGCAGCAAGAGATGAAATTGATTCGGTTTCTTGGGCACGGTGAGCTTGGTTGCTATTTGGCTGTCTTCAGTGTCTCGTTGTATTATATATTATATTACATATTATATATGTAGCTGATCCTGATAGGGACTGATTGTGGGTTGGGTGGACCAGATATGATTTTTTATAGATTCTATTATTATATTGTTAGGCCATTTTTTATTCCTATCTTGGATGGTAGGATAACGAGGTAGTTGATTATTATTTGTTTATTGTCCGAAGAGGTTATGTACATCAACAGTAACACGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00429	81153	87488	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000429s00022710.1	PF00350.18	Dynamin_N	45	221	2.90E-53
Glyur000429s00022710.1	PF01031.15	Dynamin_M	230	506	6.90E-70
Glyur000429s00022710.1	PF02212.13	GED	534	623	7.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.122
SRR1783600	control	8.412
SRR1783602	moderate drought stress	8.085
SRR1811619	moderate drought stress	7.903

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.962
DRR006520	Root Summer glycyrrhizin high producing strain	12.528
DRR006521	Root Winter glycyrrhizin high producing strain	16.510
DRR006522	Root Winter glycyrrhizin high producing strain	16.170
DRR006523	Root Summer glycyrrhizin low producing strain	31.681
DRR006524	Root Summer glycyrrhizin low producing strain	31.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.096
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.255

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.006
SRR2868004	Drought Stress (root)	29.771
SRR2967015	Control (root)	21.672

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.561
SRR9715740	Leaf	38.793
SRR9715741	Leaf	72.065
SRR9715739	Root	8.267
SRR9715742	Root	22.044
SRR9715743	Root	17.517

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.974
SRR8749028	MeJA induced 9h	25.067
SRR8749029	MeJA induced 9h	23.600
SRR8749030	Uninduced	37.287
SRR8749031	Uninduced	28.664
SRR8749032	Uninduced	25.085

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.477
SRR8400027	Control - Root	20.926