Gene detail

Gene detail information of Glyur000428s00019752

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10200.1	7.00E-74	GATA type zinc finger transcription factor family protein
NR	KHN19331.1	2.07E-130	Pollen-specific protein SF3 [Glycine soja]
Swissprot	tr\|Q94JX5\|WLIM1_ARATH	7.00E-93	LIM domain-containing protein WLIM1 {ECO:0000305}
trEMBL	tr\|I1KCJ1\|I1KCJ1_SOYBN	8.00E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G19680.1}

Sequence

Transcript Sequence

>Glyur000428s00019752.1
TCTCACTTCTAAATTTTTGTCTCTAGTAAGTTTGTAATATTAGGTAGACCCATGATCGATGATCAGCAATTTGCAACTGCTCCTTTGAATTTGTCTGAGTCTGAGCTGTAAATTCTTCAAACTTTATTATTTTTTGAAAAGAAAAGAGAGAAAATAAAAAAAGAAGAGACTGGGAGTGGTANTTGTAGCAATTAGCAAAGCAAGAAAAAGAGTCTTCTCCTACTCATTCAACAATCAACCCTCTGCAACTCCAAGTGGGATTGATTCTGGGTTGTTCTAAGTTGAGAAATGGCATCATTTGGGAGCACTACACAGAAGTGCAAGGCATGTGAGAAGACAGTGTACTTGGTGGATCAGCTCACTGCTGACAACAAGGTCTATCACAAATCTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGTTAAGTAATTTTNGTTCCTTTGAGGGCGTTTTATACTGCAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCGAGAACTACTAGACTTGAAAGATCTACCGATCAGGTCCAAACCAATAGCAAGTTTTCAAATTTGTTTGCGGGAACNCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTGGATGGAACCTCTTACCATAAGGCTTGTTTCAGGTGCACCCATGGAGGGTGTGTAATTAGCCCATCAAATTATGTGGCACATGAACATCGTCTTTATTGTAGGCACCACCATACTCAGTTGTTCAAGCAAAAAGGTAACTTCAGTCAACTTGACAAGCAAGAAAATACGGAAGGGGTNTCTGAGAACACAACAACTGAGTAATACAATACAACTTTCTAGTCACAGTGGGAATACAAGTCCAGATGGTGACTCTTTATCAGGCATCAAACGGCATTGTTTCAATCCNCATTTCTCTCTGTTTATTATGTATGTGATAACTTTTGTGAGACAAATTTTGAGGTTGAGAATTGAGTAGTAGTAGACATATAGTTTGGCTAGTTTTTTCAATAAATAATATAGCAGTCCCATCTGCATTCTGCTTTCAAGCTATGTTAAGTTTGTATTTTTGGTTACTGTAATAAAATCTGGTTCTCTTAAGTAAATGTCCTGCTGGAATTTTGGTTTTCACTTGTAAATATTTCAACTCTTGTATATGTAGAATGAAAAAAAAAAAGGGCAACTTGTGACCTCTTTGCCACGGGGTAACAACTTACGGTTACCCAAAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00428	104613	107541	+

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000428s00019752.1	PF00412.17	LIM	11	65	4.00E-13
Glyur000428s00019752.1	PF00412.17	LIM	110	165	3.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.022
SRR1783600	control	39.521
SRR1783602	moderate drought stress	30.410
SRR1811619	moderate drought stress	30.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.292
DRR006520	Root Summer glycyrrhizin high producing strain	32.749
DRR006521	Root Winter glycyrrhizin high producing strain	212.062
DRR006522	Root Winter glycyrrhizin high producing strain	205.531
DRR006523	Root Summer glycyrrhizin low producing strain	23.393
DRR006524	Root Summer glycyrrhizin low producing strain	24.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.410
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.281
SRR2868004	Drought Stress (root)	25.995
SRR2967015	Control (root)	29.145

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.855
SRR9715740	Leaf	6.895
SRR9715741	Leaf	13.060
SRR9715739	Root	7.236
SRR9715742	Root	21.180
SRR9715743	Root	17.516

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.382
SRR8749028	MeJA induced 9h	27.841
SRR8749029	MeJA induced 9h	18.399
SRR8749030	Uninduced	36.645
SRR8749031	Uninduced	16.213
SRR8749032	Uninduced	16.456

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.710
SRR8400027	Control - Root	29.119