Gene detail

Gene detail information of Glyur000428s00019750

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50100.1	7.00E-61	Putative thiol-disulphide oxidoreductase DCC
NR	KEH35064.1	2.33E-115	thiol-disulfide oxidoreductase DCC [Medicago truncatula]
COG	YP_007129286.1	1.00E-54	thiol-disulfide oxidoreductase DCC [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q8W485\|Y5010_ARATH	1.00E-80	Uncharacterized protein At5g50100, mitochondrial (Precursor)
trEMBL	tr\|A0A072UZ36\|A0A072UZ36_MEDTR	9.00E-116	Thiol-disulfide oxidoreductase DCC {ECO:0000313\|EMBL:KEH35064.1}

Sequence

Transcript Sequence

>Glyur000428s00019750.1
CGTCAATGATCTTACGTGGGTAGAGAGGGATTGGCTCCAACTTCCTTAATTCGTCGCTTGAAACAGAAAGCCAGCACTTGTCATGAATATGGGTGACCCCAAAGTTGCCACGTATTGCGAGCGATTGCGGTTAAGAATGAAGAGCGTGCCTATTGATCAGTTTGAGTTTGCTTTCTTTTAACAGAAACCGAACCTACCATCTGCAACAACAACATCAACAACTGCAATCCAGAAACCAAAAACAAAGGAATTATTATGGCTTTGAGAATCGCAGCAGCTTCTGCATCACGTATTGCAAGGCCCCAAAAAAACCCATCATTATTTTCTGCTCCACACCACAACCTCAATATTCTCAAACTCCATAACCCTCCACGTCATCCACACGCCAATGCTTTTCGCAAACCCGGGTCTCAATGCTATATTCGAGCTATTAGTGAGGCAGCTGCGGAACCTGCAATTTCTAAGAAAGAAGAGGAAGAACAGTGGAAGATTAAAATGCTATATGATGGAGACTGCCCTCTCTGCATGCGCGAGGTGAATATGCTACGAGAGAGGAATAAGAATTACGGCACGATCAAGTTTGTTGATATCAGCTCAGATGATTACTCTCCGGAACAGAATCAGGGCCTTGGCTATGAAACTGTTATGGGAAGAATTCATGCTATTCAATCAGATGGAACTGTGGTTACGGATGTTGAAGCATTCAGGAGATTATATGAAGAAGTTGGCCTTGGTTGGGTTTATGCTATTACAAAATATGAACCAATTGCGAAAATTGCTGATTCCGTATATGGTGTTTGGGCTAAATACCGTCTTCAAATTACAGGACGGCCACCTATAGANGAAATATTAGAAGGTCGAAAAAAGAAGGGTGAATTATGCAAAGACAACAATGCTTGCAAGATGTAAATTTCCACAATAGCTACTCGTGGTGAAAACTTTTAAAAGGCTCGTTATATGATTTGTTTCCAAATTTGTTCCTCATACTCTGAAGCAGATCTTTACATGATCTTATATACAAAACACAGCCAATATAGATTGATGTCACAGCATTTTACGTGTACCTCCTCAGCATATGCATTTGATAACCTTTTTCAAGTTTTGCTGCAATTGGTCTGGCATAAGAAATGGGAGTGTATATAAAATGTACTGGTATTTAAGTCATTTAGTCTTGCTTTATGTCTTGGGCAGATTCTTCAGACTGAGGTATTACAGGATGTCTTAGTCTCACATTGAATAGTATGAAATGATCGGTGGAATACTTATAACTTAACTTACTTGATTCATTCTTCCGCACCTGGGTGCTAATTATTTGGAATCAAAGTTCGTGGGTGATTATCACAATATCTCTTCAGACTCCTTAAAAACCCATAAGAAATGTTTCTTGCTAGCCTTCATGTTTTTTTTTATAGGTCGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00428	96879	100456	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000428s00019750.1	PF04134.7	DUF393	82	192	3.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.835
SRR1783600	control	5.752
SRR1783602	moderate drought stress	3.981
SRR1811619	moderate drought stress	3.996

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.190
DRR006520	Root Summer glycyrrhizin high producing strain	7.942
DRR006521	Root Winter glycyrrhizin high producing strain	13.037
DRR006522	Root Winter glycyrrhizin high producing strain	12.768
DRR006523	Root Summer glycyrrhizin low producing strain	8.994
DRR006524	Root Summer glycyrrhizin low producing strain	9.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.742

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.874
SRR2868004	Drought Stress (root)	13.830
SRR2967015	Control (root)	10.767

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.972
SRR9715740	Leaf	78.476
SRR9715741	Leaf	43.755
SRR9715739	Root	0.431
SRR9715742	Root	1.754
SRR9715743	Root	1.337

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.285
SRR8749028	MeJA induced 9h	10.923
SRR8749029	MeJA induced 9h	4.913
SRR8749030	Uninduced	16.018
SRR8749031	Uninduced	8.294
SRR8749032	Uninduced	4.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.168
SRR8400027	Control - Root	4.199