Gene detail

Gene detail information of Glyur000428s00019742

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06620.1	3.00E-45	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_006579874.1	1.85E-92	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog isoform X2 [Glycine max]
COG	YP_553500.1	1.00E-06	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q84MB3\|ACCH1_ARATH	9.00E-54	1-aminocyclopropane-1-carboxylate oxidase homolog 1
trEMBL	tr\|C6TFG1\|C6TFG1_SOYBN	8.00E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU20563.1}

Sequence

Transcript Sequence

>Glyur000428s00019742.1
ATGTGGATTGAGCCTGAGTCGTGCGGCTCCAGGGCGGTGGAGGGGTTGGATACATTCTGTCAACCCTCCTCTGTTCCTCTTTCTCGAACGATCGCAAAACGACGAAGACGGAAAGAGGAGAAGAAGAAGCACGAGAACATTCTCGAGTCTAGCACCAAGTTCCAGACACATAGCAACAATTTTTGCAACAAGAGGAAGCATCTCCAATTTGATACCTACCTTCTTTCCCAGTATGACTTTGGGGACTATGGAGGAATGGAGGTGGTTGAGAAAAGGAGTTATATGGAGCTTCCAAATGAGTTGGACAGAGGAAGTGTTTCATCAAGCTANGACAGGGAAAGTGAAGTCAAGGTATTTGATGAGTCAAAGGCTGGTGTCCAAGGACTCATAGAAAATGGGGTCACAAAAGTTCCCCCTATGTTCTATTGTGGACAGTCTAATCTCAATGATGGGTCANNTAGTGAATCAAATTCAAAGCTAAGTATTCCCACAATTGACCTCACAGGAATCCATGATGATCCTATTTTGAGAGATGAAGTTGTGAGAAAAGTCCAACATGCATGCCAGAAGTGGGGCTTCTTTCAGGTGACAAATCATGGGATTCCAACTCATGTTTTGGATGAGATGATCAAAGGGACATGCAGGTTTCACCAACAAGATGCCAAGGTGAGGAGAGAGTACTACACCCGTGATCCCAATAGGAAAGTTAATTATGTTTCCAATTATAGCCTGTACCATGACCCTGCTGCTAATTGGAGGGACACACTTGGTTGTTTGATGGCACCTCATCCACCAAAAGCAGAAGAATTGCCAGCAGTTTGCAGACTCGACACGTATGAACTTGTAACCAATGACAAGCTCATTAGCGTTCAGCATAGAGTTTTAGCCAAGCATGTAGGACCAAGAATTTCAGTTGCNTCGTTGTTTAGAACAGATGATGAATCAATAGTCTATGGTCCAATCAAGGAACTAATATCTGAAGAAAGTCCACCAGTATACAGAGATGTCTCTTTAAAAGAGTACTCAGCACAATATTATGCAAAGGGCATTGGAACTTCCGCATTATCACACTTCAAGTTGTGANTATGAACCACTGCATGCAATCTTGATGTTTTTTATATTATTCTAGTGAACTTTGGGAAGATTGATTATATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00428	51237	70956	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000428s00019742.1	PF14226.1	DIOX_N	162	261	1.60E-18
Glyur000428s00019742.2	PF14226.1	DIOX_N	145	244	1.40E-18
Glyur000428s00019742.3	PF14226.1	DIOX_N	68	170	8.70E-19
Glyur000428s00019742.3	PF03171.15	2OG-FeII_Oxy	176	208	7.90E-06
Glyur000428s00019742.4	PF03171.15	2OG-FeII_Oxy	28	58	6.50E-06
Glyur000428s00019742.5	PF14226.1	DIOX_N	68	171	1.10E-18
Glyur000428s00019742.5	PF03171.15	2OG-FeII_Oxy	176	207	7.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.020
SRR1783600	control	3.865
SRR1783602	moderate drought stress	4.429
SRR1811619	moderate drought stress	4.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.259
DRR006520	Root Summer glycyrrhizin high producing strain	3.487
DRR006521	Root Winter glycyrrhizin high producing strain	1.669
DRR006522	Root Winter glycyrrhizin high producing strain	1.676
DRR006523	Root Summer glycyrrhizin low producing strain	2.242
DRR006524	Root Summer glycyrrhizin low producing strain	2.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.096
SRR2868004	Drought Stress (root)	12.137
SRR2967015	Control (root)	12.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.470
SRR9715740	Leaf	4.554
SRR9715741	Leaf	4.193
SRR9715739	Root	1.016
SRR9715742	Root	2.155
SRR9715743	Root	2.311

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.213
SRR8749028	MeJA induced 9h	4.708
SRR8749029	MeJA induced 9h	4.787
SRR8749030	Uninduced	3.772
SRR8749031	Uninduced	1.932
SRR8749032	Uninduced	2.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.473
SRR8400027	Control - Root	6.210