Gene detail information of Glyur000427s00033834 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38140.1 | 3.00E-21 | plastid-specific ribosomal protein 4 |
| NR | XP_007152919.1 | 1.96E-58 | hypothetical protein PHAVU_004G171400g [Phaseolus vulgaris] |
| Swissprot | tr|O80439|RR31_ARATH | 6.00E-30 | 30S ribosomal protein S31, chloroplastic (Precursor) |
| trEMBL | tr|V7C6B2|V7C6B2_PHAVU | 7.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:ESW24913.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00427 | 99726 | 101016 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.059 |
| SRR1783600 | control | 14.381 |
| SRR1783602 | moderate drought stress | 14.517 |
| SRR1811619 | moderate drought stress | 14.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.740 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.228 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.040 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.695 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.117 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.299 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 168.633 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 172.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.878 |
| SRR2868004 | Drought Stress (root) | 11.511 |
| SRR2967015 | Control (root) | 9.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.371 |
| SRR9715740 | Leaf | 33.031 |
| SRR9715741 | Leaf | 21.494 |
| SRR9715739 | Root | 1.242 |
| SRR9715742 | Root | 3.780 |
| SRR9715743 | Root | 0.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.381 |
| SRR8749028 | MeJA induced 9h | 1.422 |
| SRR8749029 | MeJA induced 9h | 8.328 |
| SRR8749030 | Uninduced | 4.739 |
| SRR8749031 | Uninduced | 5.663 |
| SRR8749032 | Uninduced | 14.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.394 |
| SRR8400027 | Control - Root | 7.814 |