Gene detail

Gene detail information of Glyur000426s00022726

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62000.2	5.00E-102	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_003531527.1	1.94E-170	PREDICTED: tricin synthase 1-like [Glycine max]
COG	NP_489219.1	5.00E-70	O-methyltransferase [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9XGP7\|OMT15_ORYSJ	2.00E-48	Tricin synthase 1
trEMBL	tr\|K7L7B7\|K7L7B7_SOYBN	7.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G18740.2}

Sequence

Transcript Sequence

>Glyur000426s00022726.1
ATGGCAAATAGGAGCATCAACTTGGCGTTTCATCATGGGTCAATGTTGCCCAGTGAACCTGCAACTTNGGTACTGAGACCTGTGAGGCTATTTGCAAGCTTTCATTCGTTTTCTGCAACTGGGGTTGTCACCACTAGTGCTAGTAAATCCCTCCGTGTCTCCCCAGGAAGGTGGGGATGCAGTGCTTCTCCTTCTTGTTGTTGTTGTTGTTGTTGTTGCTTCCATTTCAGGGGATGCAGCTGCAAGTGGAAACGGCTTGTCAGAAGCGGCTCCGCCAGTGAGTTTGTTATTGCTAGTGATGAAAACTATGGCAATAAGCAGGTTGTTAGTCTCACGCCCCGCCTCTATGACTATGTCCTAAAAAATGTTCGAGAACCAGAGATTCTAAAGCAACTGCGAATGGAGACGGCCTCTATGCGTGGAAGTCAGATGCAGGTGTCTCCTGATCAGGCACAACTGCTTGCAATGCTTGTGCAGATTCTTGGAGCAGAACGGTGTATTGAAGTTGGTGTTTATACTGGTTACTCATCACTAGCCATGGCATTAGTCCTGCCAGAATCAGGTCGTTTAGTTGCCTGTGAAAGAGATGCCAAATCTCTTGATGTTGCCAAGAAGTATTATCAGCTAGCTGGTGTTTCTCATAAGGTGGATGTAAAACTTGGACTTGCAGCAGATTCCCTAGAATCTCTAATTCTTAATGGTGAAACAGAAAGCTATGATTTTGCATTTATTGATGCTGAGAAAAGGATGACTGAGAAATATTTTGAGCTGCTACTACAACTGGTGAGGGTTGGAGGTCTTATCATAATTGATAATGTCCTTTGGCATGGAAAAGTTGCTGATCCATTGGTGAGTGACTCTAAAACTATCAGCATTAGAAATGTTAATCAACGGTTAATGGAAGACAAGCGTGTAAGCATCAGTACCTATTGGAGATGGGATGACAATCTGCAGAAAAAGATGACCCATTTTTTTGAAGAATTCTTTGGCTTAAGGAGTGAACGTACTCCCTTCAGGGTGATACTTCTGTGAGATATNGGGAAAGCAAAGCTATATAAATCATTACATGTTCTTAGAACTTGAGATGTAGCATGGTATATTCTCTTAGGCTATGTTTGGATGGGGGTTTTTGGAGGGGAGGGGAGGGGAGGAGAGGGGAAGATTTATAATCCCCAATTATCTGCTTTGGGAGTTTTTAAAATTAGAAAAAAGTTTTACATCTTGGTGTCTGCTTCCTATTAAAGCCAAACAACGTAATTGGAAATTATAAGCCCTCTCCTCCCCTTCCTTCCCCTCCAAAACCCCATCCAAACATAGCCCAAGGCTCACTTTGGGAAGGATCCAAACCTGAGAACTGCATACTGAAGAATAGCATTTTGGGAATGCAGGAAACTAGATGTGTGTGATCTTCTGTACTGCAAATTTTGTACCCACCTAAGGTGGCACCTCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00426	112886	116358	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008171 O-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000426s00022726.1	PF01596.12	Methyltransf_3	123	309	1.70E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.912
SRR1783600	control	1.923
SRR1783602	moderate drought stress	2.909
SRR1811619	moderate drought stress	2.759

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.106
DRR006520	Root Summer glycyrrhizin high producing strain	6.313
DRR006521	Root Winter glycyrrhizin high producing strain	3.685
DRR006522	Root Winter glycyrrhizin high producing strain	3.292
DRR006523	Root Summer glycyrrhizin low producing strain	3.905
DRR006524	Root Summer glycyrrhizin low producing strain	3.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.698
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.679

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.976
SRR2868004	Drought Stress (root)	5.264
SRR2967015	Control (root)	4.924

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.788
SRR9715740	Leaf	6.563
SRR9715741	Leaf	7.225
SRR9715739	Root	1.223
SRR9715742	Root	2.826
SRR9715743	Root	2.519

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.762
SRR8749028	MeJA induced 9h	2.200
SRR8749029	MeJA induced 9h	1.820
SRR8749030	Uninduced	0.609
SRR8749031	Uninduced	0.106
SRR8749032	Uninduced	0.281

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.047
SRR8400027	Control - Root	4.747