Gene detail

Gene detail information of Glyur000425s00021410.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38040.1	5.00E-176	Exostosin family protein
NR	XP_003612998.1	0	Exostosin-like protein [Medicago truncatula]
Swissprot	tr\|Q9FFN2\|GLYT3_ARATH	4.00E-71	Probable glycosyltransferase At5g03795
trEMBL	tr\|G7KGK1\|G7KGK1_MEDTR	0	Glycosyltransferase family protein {ECO:0000313\|EMBL:AES95956.1}

Sequence

Transcript Sequence

>Glyur000425s00021410.1
CACAGATTCACGATCACACAGAAACAAACCCATCTCCATCCTCTCTACTCTGTTCACTCTAATCTAACAGTTGAAAAATCCCCAAACTAAACTCAAACGGAGCCTGTGAAATCCAATACTGATGACGTCCGGGAAGCAATCCCAACAGCAATCCTCATCGCACAGCCTCTTCTCCCTGCGAGGTTCACTCCTCACCCTCGCAATCCTCACTCTTCTCTCCTTCACCTTTCTCTCCCTCAAGTACTCCACCCCTTCACCACCCCAGGTCTCAGTTGCAAAGCTTGTCGATGCGGGAAGCAGAGAGGAAGAACGTGATGATGATGAAGAGTTTGGTGACGTGTATCATTCCCCGCGCGTGTTCAAGTTGAATTACGCTGAGATGGAGAAGAGGTTCAAGGTTTACATATACCCAGATGGGGATCCCAAAACGTTTTACCAGACGCCGAGGAAGCTCACCGGAAAGTACGCCAGTGAGGGCTATTTCTTCCAGAACATTCGGGAGAGTCGATTCCGCACCCTCGATCCCGATCAGGCTCACCTCTTTTTCATTCCCATCTCATGCCACAAGATGCGTGGCAAGGGCACATCTTATGAGAATATGACCATAATTGTCCAAAATTACGTGGAGAGCTTAATGTCCAAATATCCTTATTGGAACAGAACCTTGGGTGCTGATCACTTCTTTGTCACTTGTCATGATGTTGGGGTAAGGGCAACAGAAGGACTTCCACTTCTTGTAAAGAATTCCATTCGAGCAGTGTGCTCCCCCAGCTATGATGTTGGATTCATTCCACACAAAGATGTTGCTCTTCCTCAANTACTACAGCCATTTGCTCTCCCAGCTGGAGGGAATGATATAGAAAACAGGACAAATCTTGGATTTTGGGCGGGTCATCGTAACTCTAAAATTAGAGTTATTCTTGCACGTGTATGGGAAAATGACACAGAACTTGACATTTCAAACAACAGAATTAGTAGGGCTATTGGGCCTCTAGTGTACCAGAAAAGATTTTACCGGAGTAAATTTTGTATATGCCCTGGTGGATCACAGGTTAATAGTGCTCGAATAGCAGACTCTATCCATTATGGATGCATCCCTGTGATATTATCAGATTACTATGATCTTCCTTTTAATGATATTCTTGACTGGAGAAAATTTGCTGTTGTACTCAAGGAGAGTGATGTTTACCAGCTTAAACAAATCCTCAAAAATATATCGAATGCTGAGTTTGTTGCGCTTCATAATAATTTAGTAAAGATTCAGAAACACTTCCAGTGGAATTCGCCCCAGTCGGATATGATGCTTTCCATATGGTTATGTATGACCTCTGGTTACGCCATCACACCATCAAATACTGATGATATATATTAAGACTCACTCTTGTTTTGATTTGTATACACGTTACAGTTTTAGCATCCCAGAGAGGCACTGTAAATATAGCTACGTTACGGTTTTGTATGTAACAACTGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00425	152892	157824	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000425s00021410.1	PF03016.10	Exostosin	88	365	2.00E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.226
SRR1783600	control	17.754
SRR1783602	moderate drought stress	20.946
SRR1811619	moderate drought stress	20.739

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.472
DRR006520	Root Summer glycyrrhizin high producing strain	20.949
DRR006521	Root Winter glycyrrhizin high producing strain	23.826
DRR006522	Root Winter glycyrrhizin high producing strain	23.254
DRR006523	Root Summer glycyrrhizin low producing strain	24.423
DRR006524	Root Summer glycyrrhizin low producing strain	24.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.249
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.686
SRR2868004	Drought Stress (root)	22.027
SRR2967015	Control (root)	21.040

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.472
SRR9715740	Leaf	14.608
SRR9715741	Leaf	14.696
SRR9715739	Root	9.286
SRR9715742	Root	13.590
SRR9715743	Root	11.972

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.196
SRR8749028	MeJA induced 9h	20.493
SRR8749029	MeJA induced 9h	17.565
SRR8749030	Uninduced	8.496
SRR8749031	Uninduced	10.185
SRR8749032	Uninduced	5.790

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.916
SRR8400027	Control - Root	20.257