Gene detail

Gene detail information of Glyur000425s00021404.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37990.1	1.00E-88	elicitor-activated gene 3-2
NR	KHN38894.1	6.26E-170	Putative mannitol dehydrogenase [Glycine soja]
COG	YP_005369449.1	8.00E-101	alcohol dehydrogenase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9ZRF1\|MTDH_FRAAN	5.00E-141	Probable mannitol dehydrogenase
trEMBL	tr\|I1L4T5\|I1L4T5_SOYBN	1.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G33390.1}

Sequence

Transcript Sequence

>Glyur000425s00021404.1
ATGGCTGTGAAGCTTTCCAAAGCTTTTGGAGTCAATGTGACAGTAATCAGTACATCACCCAACAAAAAGGAGGAAGCAATTGAACACCTTGGAGCTGACTCGTTTGTAGTAAGCCGTGACCCNGATCAGATGCAGGCTGCAACGGGCACTTTGGATGGTATTATTGACACAGTTTCTGCTGATCATCCTCTTTTACCCCTGATTGGTTTGCTGAAATCTCATGGAAAACTTGTATTGGTTGGTGCACCTGAGAAGCCTCTGGANTTGCCTGTCTGGCCTATACTAGCAGGGAGAAAGATGGTATCAGGAAGTAGTATTGGAGGGATGAAGGAGACACAAGAGGTGCTTGATTTTGCTGCAGAACACAATGTAAAACCTGATATTGAAGTCATTCCTATTGATTATGTCAACACAGCAATGGAGCGTCTCCTCANAGCAGATGTGAAATATCGATTTGTGATTGACATTGGGAATACTCTTACACCAACTAGAGACAGCTCGGGAATTATATCCCCATTCCACTTTGCCCGAAGGTATATATATATATATATATATATATATATAATATTTTTTCTTGAATTGCATGCGCTAATTCAAATCAAAATAAAACCAATTCTTCACGAGCAGAGCACTGATCTTGTTCTATATATTTCTTCAACAAACAGGGCTAATGGTGATAATGATATCACCCTCGACATACTCTATTGTGGGATTTGCCACTCGGATCTCCATATGGTGAAGAACGAGTTTGGATTGTCCATCTATCCAATGGTTCCTGGGGCTAATGGTGATAATGATATCACCCTCGACATACTCTATTGTGGGATTTGCCACTCGGATCTCCATATGGTGAAGAACGAGTTTGGATTGTCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAAGTGACAAAGGTGGGTAGCAGAGTCACAAAATTTAGTGTTGGTGACATAGCCGGCGTAGGTGGCGTTGTGGGATCGTGTGGCTCGTGTTCCGAATGCAGCAAGGGCTTCTACGTATATTGCCCAAAAATGATTTTAACCTACGGTGCGCGCTACCATGATGGGTCAATAACACAAGGTGGATACTCGGATAAGCTAGTGGTTGATCAGAACTTTGCAGTGTTGATCCCAAAATCCCTGCCACTAGATGGTGCAGCCCCATTGCTTTGTGCTGGAATCACAGTGTATAGNCCCATGAAGTATTTTGGGCTTGCTGGGCCTGGATTACACTTGGGCGTTGTGGGCCTGGGAGGCCTTGGTCATGTGGCTGTCAAGTTTGCTAAGGCTTTTGGCATGCGTGTCACTGTGATAAGTACATCTCCCAACAAGAAGAAGGAAGCATTAGACAAGCTTGGTGCTGATGCATTCTTGGATGCCATGGGCACAATGGATGGCATTATTGACACAGTTTCAGCTAACCACTCTGTCCAGACATTGGTTGGTTTATTGAAACCAAGTGGAAAATTGATTTTGGTGGGAGNACCACCCTTGCCTTTTGAGATATCAGCTATGCCATTGCTTTTGGGGAGGAAGATGATTGCTGGAAGTGCAGGAGGGGGGATGGAAGAGATGCAAGAGATGATGGATTTTGCAGCAAGGCATAATATAACGGCAGATGTTGAGGTCATTCCAATGGACTATGTGAACACTGCCTTTGAAAGAGTTAAAAACAATGATGTTAAGTANCGCTTTGTCATTGATGTGGCAAATACAATAAACTGCGTGTCCAATTAGAGAACCATATATATGGAAGTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00425	98571	118339	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000425s00021404.1	PF00107.21	ADH_zinc_N	1	120	7.50E-18
Glyur000425s00021404.1	PF08240.7	ADH_N	227	261	0.00011
Glyur000425s00021404.1	PF08240.7	ADH_N	265	377	5.60E-25
Glyur000425s00021404.1	PF00107.21	ADH_zinc_N	421	535	2.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.710
SRR1783600	control	0.599
SRR1783602	moderate drought stress	0.659
SRR1811619	moderate drought stress	0.588

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.167
DRR006520	Root Summer glycyrrhizin high producing strain	0.182
DRR006521	Root Winter glycyrrhizin high producing strain	0.052
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.950
DRR006524	Root Summer glycyrrhizin low producing strain	3.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.569
SRR2868004	Drought Stress (root)	123.712
SRR2967015	Control (root)	45.183

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.154
SRR9715740	Leaf	0.026
SRR9715741	Leaf	0.051
SRR9715739	Root	2.701
SRR9715742	Root	9.043
SRR9715743	Root	7.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.124
SRR8749028	MeJA induced 9h	47.113
SRR8749029	MeJA induced 9h	31.104
SRR8749030	Uninduced	137.851
SRR8749031	Uninduced	95.241
SRR8749032	Uninduced	55.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.330
SRR8400027	Control - Root	9.110