Gene detail

Gene detail information of Glyur000425s00021401

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37970.1	4.00E-77	cinnamyl alcohol dehydrogenase 6
NR	CDP01602.1	0	unnamed protein product [Coffea canephora]
COG	YP_005036923.1	3.00E-83	putative dehydrogenase [Bacteriovorax marinus SJ]
Swissprot	tr\|Q9ZRF1\|MTDH_FRAAN	8.00E-138	Probable mannitol dehydrogenase
trEMBL	tr\|A0A068TZX3\|A0A068TZX3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01602.1}

Sequence

Transcript Sequence

>Glyur000425s00021401.1
ATGGCAACACANNNTGAAGTTGAGCATCCTAAGAAGGCCTTTGGATGGGCAGCAAGAGATCCTTCTGGTTTCCTCTCCCCTTTCAATTTCTCCNGAAGGCATGAGGTTGTTGGTGTAGTGACAGACGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGGGACAAAGTGGGTGTGGGATGCATGGTTGATTCATGCCGCTCGTGCCAAAGCTGTGCTGATGATCTTGAAAATCACTGCCCAAGATACACTCTCACATATGGTGCCAAATATAAGGATGGCACAATCACATATGGAGGATACTCTGACTCAATGGTTGCAGAGGAGCACTTTATAGTTCGCATTCCTGATGGGTTACCTCTTGATGCTGCTGCTCCTCTTCTTTGTGCTGGAATCACAGTATATAGCCCTCTCAGATATTTTGGACTCGACAAGCCCAATTTGAATGTGGGTGTGGTTGGTCTTGGTGGGCTAGGCCATATGGCAGTGAAGTTTGCCAAAGCTTTTGGGGCTAATGTGACTGCTGCAGTGGGTACGTTGGATGGCATTATTGACACAGTATCTGCTGTTCATCCTCTCTTACCCCTAATTGGATTACTAAAGTCTAATGGAAAGCTTGTAATGGTTGGTGCACCAGAGAAGCCTTTGGAGCTCCCTATCTTTCCTTTACTTTCGGGGAGAAAGATGGTAGCTGGCAGTGGAATTGGAGGGATGAAGGAGACCCAGGAGATGATTGATTTTGCTGCAGAACACAATGTAAAACCTGACATTGAGGTCATTCCTATGGATTATATCAACACAGCAATGGAGCGCCTCCACAAAGCAGATGTGAGATATCGATTTGCCTTTGGATGGGCAGCAAGAGATCCTTCTGGTTTCCTCTCCCCTTTCAATTTCTCCAGAAGGGAAACGGGTGAGAAAGATGTGGCATTCAAAGTGCTGTACTGTGGGATATGCCACTCAGACCTCCACATGGCTAAGAACGAATGGGGCACTTCCACCTATCCACTAGTCCCTGGGCATGAGACTGTTGGTGTGGTGACAGAGGTGGGGAGCAAAGTAGAGAAGTTCAAAGTTGGAGACAAGGTGGGTGTGGGATGCATGGTTGATTCCTGCCGCTCGTGCCAAAATTGTGCTAACAATTTTGAGAATTACTGCCCAACATATACTCTCACATATGGTGCCAAATATAGGGATGGCACCACCACATATGGAGGCTACTCTGACTCAATGGTTGCAGATGAGCGCTTTGTGGTTCGCATTCCTGATGGCTTACCTCTTGATGCTGCTGCTCCTCTCCTTTGTGCCGGCCGGGGTCACGGTATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00425	88388	98497	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00083	E1.1.1.195	EC:1.1.1.195	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000425s00021401.1	PF08240.7	ADH_N	29	113	3.40E-15
Glyur000425s00021401.1	PF00107.21	ADH_zinc_N	179	248	1.50E-07
Glyur000425s00021401.1	PF08240.7	ADH_N	306	419	3.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.628
SRR1783600	control	1.696
SRR1783602	moderate drought stress	1.702
SRR1811619	moderate drought stress	1.923

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.080
DRR006521	Root Winter glycyrrhizin high producing strain	0.588
DRR006522	Root Winter glycyrrhizin high producing strain	0.655
DRR006523	Root Summer glycyrrhizin low producing strain	0.112
DRR006524	Root Summer glycyrrhizin low producing strain	0.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.950
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.968

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.595
SRR2868004	Drought Stress (root)	167.338
SRR2967015	Control (root)	57.027

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.661
SRR9715740	Leaf	10.552
SRR9715741	Leaf	58.710
SRR9715739	Root	4.373
SRR9715742	Root	2.826
SRR9715743	Root	3.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	127.372
SRR8749028	MeJA induced 9h	188.280
SRR8749029	MeJA induced 9h	248.569
SRR8749030	Uninduced	1264.387
SRR8749031	Uninduced	1247.978
SRR8749032	Uninduced	922.904

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.619
SRR8400027	Control - Root	12.567